Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0008758 (gabD) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0008758 showshow history
Names
gabD JW2636 ECK2655 b2661
Product
succinate-semialdehyde dehydrogenase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 2791273 2792721 1449 483
Sequence

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View sequence with flanking regions: bases upstream and bases downstream

Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR012303 (IPR012303 (DEPRECATED) NAD-dependent aldehyde dehydrogenase) Apr 2008
Automated Process Approved IPR015590 (IPR015590 Aldehyde dehydrogenase domain) Apr 2008
Automated Process Approved IPR010102 (IPR010102 Succinate semialdehyde dehydrogenase) Apr 2008
Automated Process Approved IPR016161 (IPR016161 Aldehyde/histidinol dehydrogenase) Jul 2018
Automated Process Approved PF00171 (PF00171 Aldehyde dehydrogenase family) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Approved GO biological process GO:0009450 gamma-aminobutyric acid catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR015590, IPR016161
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR015590, IPR010102, IPR016161
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO biological process GO:0009447 putrescine catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Uncurated GO molecular function GO:0009013 succinate-semialdehyde dehydrogenase [NAD(P)+] activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR010102
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010102
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR015590, IPR016161
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name gabD Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym ECK2655 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW2636 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b2661 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product succinate-semialdehyde dehydrogenase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Oct 2021
Person Approved alternate product name succinate-semialdehyde dehydrogenase, NADP-dependent activity Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Uncurated alternate product name succinate-semialdehyde dehydrogenase I, NADP-dependent Published Annotation - Database Name: GenProtEC Jan 2006
Protein Family
Automated Process Approved protein family IPR016161 Aldehyde/histidinol dehydrogenase Protein Sequence Similarity - InterPro Domain: IPR016161
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF00171 Aldehyde dehydrogenase family Protein Sequence Similarity - PFAM Model Name: PF00171
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR010102 Succinate semialdehyde dehydrogenase Protein Sequence Similarity - InterPro Domain: IPR010102
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR015590 Aldehyde dehydrogenase domain Protein Sequence Similarity - InterPro Domain: IPR015590
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR012303 (DEPRECATED) NAD-dependent aldehyde dehydrogenase Protein Sequence Similarity - InterPro Domain: IPR012303
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Automated Process Uncurated EC number 1.-.-.- Published Annotation - Database Name: EC2GO: GO:0016491
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Approved EC number 1.2.1.16 Published Annotation - Swiss-Prot Accession Number: P25526 Feb 2006
Person Uncurated MultiFun 1.7.32 (metabolism; central intermediary metabolism; putrescine catabolism) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.7.31 (metabolism; central intermediary metabolism; aminobutyrate catabolism) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0008758 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P25526 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P25526 Published Annotation - Swiss-Prot Accession Number: P25526 Jan 2005
Automated Process Approved db xref GeneID:948060 Published Annotation - Entrez Gene Database ID: 948060
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref EcoGene:EG11329 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1789015 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Central intermediary metabolism: Pool, multipurpose conversions Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note succinate-semialdehyde dehydrogenase, NADP-dependent activity; GO_process: GO:0009450 - gamma-aminobutyric acid catabolic process; GO_process: GO:0009447 - putrescine catabolic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC75708.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 9.97
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Uncurated GO biological process GO:0009447 putrescine catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR015590, IPR016161
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Approved GO biological process GO:0009450 gamma-aminobutyric acid catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR015590, IPR010102, IPR016161
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Uncurated GO molecular function GO:0009013 succinate-semialdehyde dehydrogenase [NAD(P)+] activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR010102
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR015590, IPR016161
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010102
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000535 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000089 gabD CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000076 gabD CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000020 gabD CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000142 gabD CDS
Ortholog
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0003339 CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0000040 CDS
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0003480 gabD_2 CDS
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0004207 gabD_2 CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0006618 CDS
Person Uncurated Go view Dickeya dadantii 3937 ABF-0015626 gabD pseudogene
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0002236 CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001302 CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0002886 gabD CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008771 gabD CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0002648 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008508 CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0002658 gabD CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0001637 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0006565 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007356 gabD CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007306 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0079358 gabD CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0003041 gabD CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009708 gabD CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009926 gabD CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0003102 gabD CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0007378 gabD CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001225 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007242 gabD CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005762 gabD CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005238 gabD CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009000 gabD CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0008739 gabD CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007458 gabD CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006532 gabD CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007356 gabD CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0008174 gabD CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0008035 gabD CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0008258 gabD CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0009829 gabD CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0027633 gabD CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0006299 gabD CDS
Automated Process Approved Go view Escherichia coli HS ADR-0007470 gabD CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0001423 gabD CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0002729 gabD CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0003231 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0003143 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0003075 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0002966 gabD CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0002966 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0002779 gabD CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0133551 gabD CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0000809 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0003025 gabD CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0003658 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0004317 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0000257 gabD CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0002922 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0006490 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0001889 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0007672 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0287269 gabD CDS
Person Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0062315 gabD CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0003927 CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0000531 gabD CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0003645 gabD CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0007164 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0139014 gabD CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0000302 gabD-2 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0007071 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000186 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0003190 gabD CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007350 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0008610 gabD CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0008166 gabD CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006618 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0007331 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008177 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006806 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0008036 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006454 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0007347 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005711 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0002676 CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0002647 gabD CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0003482 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007510 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0007844 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007897 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0111239 gabD CDS
Person Uncurated Go view Salmonella Typhi Ty2 ABS-0084403 gabD CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0003372 gabD CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0098752 gabD CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006514 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0009034 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006715 CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0264840 gabD CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005604 gabD CDS
Person Uncurated Go view Shigella flexneri 301 ABT-0088939 gabD pseudogene
Person Approved Go view Shigella sonnei 046 ADD-0003073 gabD CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0001818 VC1745 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0001387 gabD CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000906 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0010884 gabD CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002772 gabD CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001011 gabD_1 CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003745 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0285071 CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005627 CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004414 CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005396 CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0004326 CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006155 CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0004638 CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003798 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005297 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005187 CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005336 CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0004189 CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0000342 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006387 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004361 gabD CDS
Person Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0003657 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0004448 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0000564 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0009624 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0001679 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB20871mutantTn5 InsertionRequest the StrainABE-0008758gabDgabD::Tn5KAN-I-SceI at position 1351 in Minus orientation ,- pKD465Blattner Laboratory
FB20872mutantTn5 InsertionRequest the StrainABE-0008758gabDgabD::Tn5KAN-I-SceI at position 1351 in Minus orientation ,+ pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2786273 to 2797721
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0008739ygaQ_1CDSpforward27863972786729Upstream
ABE-0285128ygaQpseudogeneforward27863972788649Upstream
ABE-0174112ygaQ_2CDSpforward27867482787434Upstream
ABE-0008747ygaQ_3CDSpforward27876422788238Upstream
ABE-0008751ygaQ_4CDSpforward27883772788649Upstream
ABE-0008754glaHCDSforward27889852789962Upstream
ABE-0008756lhgDCDSforward27899822791250Upstream
ABE-0008758gabDCDSforward27912732792721Matches
ABE-0008760gabTCDSforward27927352794015Downstream
ABE-0285535repeat_regionforward27940282794163Downstream
ABE-0008763gabPCDSforward27942532795653Downstream
ABE-0008765glaRCDSforward27956742796336Downstream
ABE-0008767kbpCDScomplement27963372796786Downstream
ABE-0008770yqaECDScomplement27968702797028Downstream
ABE-0008784ygaVCDSforward27972112797510Downstream
ABE-0008786ygaPCDSforward27975202798044Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.