Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0008786 (ygaP) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0008786 showshow history
Names
ygaP JW2643 ECK2662 b2668
Product
thiosulfate sulfurtransferase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 2797520 2798044 525 175
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR001763 (IPR001763 Rhodanese-like domain) Apr 2008
Automated Process Approved IPR021309 (IPR021309 Protein of unknown function DUF2892) Jul 2018
Automated Process Approved IPR036873 (IPR036873 Rhodanese-like domain superfamily) Jul 2018
Automated Process Approved PF00581 (PF00581 Rhodanese-like domain) Jul 2018
Automated Process Approved PF11127 (PF11127 Protein of unknown function (DUF2892)) Jul 2018
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name ygaP Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym JW2643 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK2662 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b2668 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product thiosulfate sulfurtransferase Published Annotation - EcoCyc Accession Number: G7398
Reference: Escherichia coli K-12 MG1655 		Jan 2021
Person Approved alternate product name predicted inner membrane protein with hydrolase activity Published Annotation - PubMed ID: 16397293 Jan 2006
Person Uncurated alternate product name putative phosphatase Published Annotation - Database Name: GenProtEC Jan 2006
Protein Family
Automated Process Approved protein family IPR001763 Rhodanese-like domain Protein Sequence Similarity - InterPro Domain: IPR001763
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF00581 Rhodanese-like domain Protein Sequence Similarity - PFAM Model Name: PF00581
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF11127 Protein of unknown function (DUF2892) Protein Sequence Similarity - PFAM Model Name: PF11127
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR036873 Rhodanese-like domain superfamily Protein Sequence Similarity - InterPro Domain: IPR036873
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR021309 Protein of unknown function DUF2892 Protein Sequence Similarity - InterPro Domain: IPR021309
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG13288 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0008786 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:947135 Published Annotation - Entrez Gene Database ID: 947135
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P55734 Published Annotation - Swiss-Prot Accession Number: P55734 Jan 2005
Automated Process Approved db xref UniProtKB/Swiss-Prot:P55734 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1789022 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC75715.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Unknown Predicted by PSORTb - PSORTb Final_Score: 2.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0003120 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002730 ygaP CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002814 ygaP CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0008639 ygaP CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0002641 ygaP CDS
Ortholog
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0000536 CDS
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0003487 ygaP CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0004998 CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0002880 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008764 CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0002655 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008501 CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0002664 ygaP CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0001630 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0006558 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007363 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007313 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0079367 ygaP CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0003048 ygaP CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0003557 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009701 CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009919 CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0003109 ygaP CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0007385 CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001232 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007249 CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005769 CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005245 CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009007 CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0008746 CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007451 CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006539 CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007363 CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0008181 CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0008042 CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0008265 CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0009836 CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0027641 ygaP CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0006306 ygaP CDS
Automated Process Approved Go view Escherichia coli HS ADR-0007477 CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0001416 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0002506 ygaP CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0002736 ygaP CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0003238 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0003150 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0003082 ygaP CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0002973 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0177225 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0002973 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0002786 CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0133558 CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0000816 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0003033 ygaP CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0003005 ygaP CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0005990 CDS
Person Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0063034 CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001618 CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0001900 CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0004483 CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0006386 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0007078 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000179 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0003197 ygaP CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007357 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0008637 ygaP CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0008192 ygaP CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006611 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0007338 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008184 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006799 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0008043 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006461 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0007354 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005704 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0002683 CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0002654 ygaP CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0003489 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007517 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0007837 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007015 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007904 CDS
Person Uncurated Go view Salmonella Typhi CT18 ABX-0111261 CDS
Person Uncurated Go view Salmonella Typhi Ty2 ABS-0084410 CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0003380 ygaP CDS
Person Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0098771 ygaP CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006507 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0009027 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006722 CDS
Person Approved Go view Shigella boydii 227 ADV-0003133 ygaP CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0008626 CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005595 CDS
Person Uncurated Go view Shigella dysenteriae 197 ADU-0003273 ygaP CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0074044 ygaP CDS
Person Approved Go view Shigella flexneri 301 ABT-0088946 ygaP CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0003026 ygaP CDS
Person Approved Go view Shigella sonnei 046 ADD-0003080 ygaP CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2792520 to 2803044
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0008758gabDCDSforward27912732792721Upstream
ABE-0008760gabTCDSforward27927352794015Upstream
ABE-0285535repeat_regionforward27940282794163Upstream
ABE-0008763gabPCDSforward27942532795653Upstream
ABE-0008765glaRCDSforward27956742796336Upstream
ABE-0008767kbpCDScomplement27963372796786Upstream
ABE-0008770yqaECDScomplement27968702797028Upstream
ABE-0008784ygaVCDSforward27972112797510Upstream
ABE-0008786ygaPCDSforward27975202798044Matches
ABE-0285536repeat_regionforward27980532798082Downstream
ABE-0008788stpACDScomplement27980912798495Downstream
ABE-0008793alaECDSforward27991642799613Downstream
ABE-0008795ygaCCDScomplement27996502799994Downstream
ABE-0008799ygaMCDSforward28001462800475Downstream
ABE-0008802nrdHCDSforward28007232800968Downstream
ABE-0008804nrdICDSforward28009652801375Downstream
ABE-0008806nrdECDSforward28013482803492Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.