Escherichia coli K-12 MG1655
Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0008806 (nrdE) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0008806 showshow history
Names
nrdE JW2650 ECK2669 b2675
Product
ribonucleoside-diphosphate reductase 2 subunit alpha
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 2801348 2803492 2145 715
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000981
EnteroFam0008806: Trusted threshold=1872.8; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043).
Jan 2006
Automated Process Approved IPR008926 (IPR008926 Ribonucleotide reductase R1 subunit, N-terminal) Apr 2008
Automated Process Approved IPR013554 (IPR013554 Ribonucleotide reductase N-terminal) Apr 2008
Automated Process Approved IPR000788 (IPR000788 Ribonucleotide reductase large subunit, C-terminal) Apr 2008
Automated Process Approved IPR013346 (IPR013346 Ribonucleotide reductase, class I , alpha subunit) Apr 2008
Automated Process Approved IPR013509 (IPR013509 Ribonucleotide reductase large subunit, N-terminal) Apr 2008
Automated Process Approved IPR026459 (IPR026459 Ribonucleotide reductase, class 1b, subunit NrdE) Jul 2018
Automated Process Approved PF08343 (PF08343 Ribonucleotide reductase N-terminal) Jul 2018
Automated Process Approved PF00317 (PF00317 Ribonucleotide reductase, all-alpha domain) Jul 2018
Automated Process Approved PF02867 (PF02867 Ribonucleotide reductase, barrel domain) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0015949 nucleobase-containing small molecule interconversion Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR013509, IPR000788, IPR013346
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved GO biological process GO:0006260 DNA replication GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000788
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved GO cellular component GO:0005971 ribonucleoside-diphosphate reductase complex GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000788
Reference: Escherichia coli K-12 MG1655
Apr 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR013509
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved GO molecular function GO:0004748 ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000788
Reference: Escherichia coli K-12 MG1655
Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name nrdE Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655
Sep 2007
Person Approved synonym JW2650 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK2669 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b2675 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product ribonucleoside-diphosphate reductase 2 subunit alpha Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12
Oct 2021
Person Approved alternate product name ribonucleoside-diphosphate reductase 2, alpha subunit Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655
Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0008806: Trusted threshold=1872.8; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000981
Reference: EnteroFams
Jan 2006
Automated Process Approved protein family IPR013554 Ribonucleotide reductase N-terminal Protein Sequence Similarity - InterPro Domain: IPR013554
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved protein family IPR008926 Ribonucleotide reductase R1 subunit, N-terminal Protein Sequence Similarity - InterPro Domain: IPR008926
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved protein family IPR000788 Ribonucleotide reductase large subunit, C-terminal Protein Sequence Similarity - InterPro Domain: IPR000788
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved protein family PF08343 Ribonucleotide reductase N-terminal Protein Sequence Similarity - PFAM Model Name: PF08343
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved protein family IPR013346 Ribonucleotide reductase, class I , alpha subunit Protein Sequence Similarity - InterPro Domain: IPR013346
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved protein family IPR013509 Ribonucleotide reductase large subunit, N-terminal Protein Sequence Similarity - InterPro Domain: IPR013509
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved protein family IPR026459 Ribonucleotide reductase, class 1b, subunit NrdE Protein Sequence Similarity - InterPro Domain: IPR026459
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved protein family PF00317 Ribonucleotide reductase, all-alpha domain Protein Sequence Similarity - PFAM Model Name: PF00317
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved protein family PF02867 Ribonucleotide reductase, barrel domain Protein Sequence Similarity - PFAM Model Name: PF02867
Reference: Escherichia coli K-12 MG1655
Jul 2018
Other
Person Approved EC number 1.17.4.1 Published Annotation - Swiss-Prot Accession Number: P39452 Feb 2006
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.7.33 (metabolism; central intermediary metabolism; nucleotide and nucleoside conversions) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref GI:1789030 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref GeneID:947155 Published Annotation - Entrez Gene Database ID: 947155
Reference: Escherichia coli K-12 MG1655
Jun 2009
Person Approved db xref UniProtKB:P39452 Published Annotation - Swiss-Prot Accession Number: P39452 Jan 2005
Automated Process Approved db xref UniProtKB/Swiss-Prot:P39452 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref ASAP:ABE-0008806 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref EcoGene:EG20257 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Person Approved function enzyme; Central intermediary metabolism: Nucleotide interconversions Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655
Oct 1998
Automated Process Approved note GO_component: GO:0005737 - cytoplasm; GO_process: GO:0015949 - nucleobase, nucleoside and nucleotide interconversion Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved protein id AAC75722.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Uncurated subcellular localization Unknown Predicted by PSORTb - PSORTb Final_Score: 2.00
Reference: Escherichia coli K-12 MG1655
Feb 2008
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655
Feb 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655
Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655
Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0006260 DNA replication GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000788
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR013509, IPR000788, IPR013346
Reference: Escherichia coli K-12 MG1655
Jul 2018
Person Uncurated GO biological process GO:0015949 nucleobase-containing small molecule interconversion Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0005971 ribonucleoside-diphosphate reductase complex GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000788
Reference: Escherichia coli K-12 MG1655
Apr 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR013509
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved GO molecular function GO:0004748 ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000788
Reference: Escherichia coli K-12 MG1655
Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000981 nrdE CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0002102 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001816 nrdE CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001927 nrdE CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001334 nrdE CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001960 nrdE CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0002154 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0001002 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0003397 CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0000526 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0003496 nrdE CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0004224 nrdE CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0005586 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0020533 nrdE CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0004989 CDS
Automated Process Approved Go view Erwinia amylovora ATCC 49946 ACW-0304317 nrdE CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0002909 nrdE CDS
Automated Process Approved Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000982 nrdE CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0002871 nrdE CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008757 nrdE CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0002664 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008493 nrdE CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0002672 nrdE CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0001620 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0006551 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007370 nrdE CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007320 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0079378 nrdE CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0003055 CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0003564 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009694 nrdE CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009912 nrdE CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0003118 nrdE CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0007393 nrdE CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001242 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007258 nrdE CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005778 nrdE CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005254 nrdE CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009016 nrdE CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0008755 nrdE CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007442 nrdE CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006548 nrdE CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007372 nrdE CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0008190 nrdE CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0008051 nrdE CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0008274 nrdE CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0027651 nrdE CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0006316 nrdE CDS
Automated Process Approved Go view Escherichia coli HS ADR-0007485 nrdE CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0001407 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0002512 nrdE CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0002743 nrdE CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0003245 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0003157 nrdE CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0003089 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0002984 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0177236 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0002980 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0002795 nrdE CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0133567 nrdE CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0000825 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0003044 nrdE CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0002881 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0003015 nrdE CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0001373 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0002291 CDS
Automated Process Approved Go view Pantoea agglomerans SL1-M5 ALY-0003278 CDS
Automated Process Approved Go view Pantoea ananatis AJ13355 AOV-0002306 nrdE CDS
Automated Process Approved Go view Pantoea ananatis B1-9 APL-0001693 CDS
Automated Process Approved Go view Pantoea ananatis LMG 20103 AKB-0003072 nrdE CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0001082 CDS
Automated Process Approved Go view Pantoea sp. At-9b AGM-0010763 CDS
Automated Process Approved Go view Pantoea sp. aB AJV-0000874 CDS
Person Uncurated Go view Pantoea stewartii DC283 ACV-0291528 nrdE pseudogene
Automated Process Approved Go view Pantoea vagans C9-1 ALK-0006118 nrdE CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0063632 nrdE CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002856 CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0004139 nrdE CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0004098 nrdE CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0008245 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0139670 nrdE CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0007091 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000170 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0003208 nrdE CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007370 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0008661 nrdE CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0008215 nrdE CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006599 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0007350 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008196 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006788 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0008055 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006473 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0007366 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005692 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0002693 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0002664 nrdE CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0003502 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007530 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0007824 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007027 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007916 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0111278 nrdE CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0084421 nrdE CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0003394 nrdE CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0098799 nrdE CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006495 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0009015 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006735 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0001964 CDS
Person Approved Go view Shigella boydii 227 ADV-0003123 nrdE CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0008617 nrdE CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005587 nrdE CDS
Person Uncurated Go view Shigella dysenteriae 197 ADU-0003284 nrdE CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0074051 nrdE CDS
Person Approved Go view Shigella flexneri 301 ABT-0088953 nrdE CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0003019 nrdE CDS
Person Approved Go view Shigella sonnei 046 ADD-0003089 nrdE CDS
Person Uncurated Go view Wigglesworthia morsitans AEQ-0000271 nrdE CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002016 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0002811 nrdE CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003072 nrdE CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002346 nrdE CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002068 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0240217 nrdE CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007660 CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002860 nrdE CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0006505 CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0000829 nrdE CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0124151 nrdE CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0004491 CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0005340 CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0004107 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0009344 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004717 CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030893 nrdE CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007218 CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0001376 nrdE CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0001937 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005327 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005019 CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0003053 nrdE CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0003671 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0001309 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0003173 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0002143 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)

Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB20875mutantTn5 InsertionRequest the StrainABE-0008806nrdEnrdE::Tn5KAN-I-SceI at position 339 in Plus orientation ,- pKD465Blattner Laboratory
FB20876mutantTn5 InsertionRequest the StrainABE-0008806nrdEnrdE::Tn5KAN-I-SceI at position 339 in Plus orientation ,+ pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2796348 to 2808492
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0008767kbpCDScomplement27963372796786Upstream
ABE-0008770yqaECDScomplement27968702797028Upstream
ABE-0008784ygaVCDSforward27972112797510Upstream
ABE-0008786ygaPCDSforward27975202798044Upstream
ABE-0285536repeat_regionforward27980532798082Upstream
ABE-0008788stpACDScomplement27980912798495Upstream
ABE-0008793alaECDSforward27991642799613Upstream
ABE-0008795ygaCCDScomplement27996502799994Upstream
ABE-0008799ygaMCDSforward28001462800475Upstream
ABE-0008802nrdHCDSforward28007232800968Upstream
ABE-0008804nrdICDSforward28009652801375Overlaps Upstream
ABE-0008806nrdECDSforward28013482803492Matches
ABE-0008808nrdFCDSforward28035022804461Downstream
ABE-0008814proVCDSforward28048152806017Downstream
ABE-0008816proWCDSforward28060102807074Downstream
ABE-0008818proXCDSforward28071322808124Downstream
ABE-0285537repeat_regionforward28081312808214Downstream
ABE-0008822ygaY_1CDSpforward28083162808582Downstream
ABE-0285129ygaYpseudogeneforward28083162809493Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.