Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0008808 (nrdF) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0008808 showshow history
Names
nrdF ygaD JW2651 ECK2670 b2676
Product
ribonucleoside-diphosphate reductase 2 subunit beta
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 2803502 2804461 960 320
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000982
EnteroFam0008808: Trusted threshold=868.4; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR009078 (IPR009078 Ferritin-like superfamily) Apr 2008
Automated Process Approved IPR000358 (IPR000358 Ribonucleotide reductase small subunit family) Apr 2008
Automated Process Approved IPR012348 (IPR012348 Ribonucleotide reductase-like) Apr 2008
Automated Process Approved IPR026494 (IPR026494 Ribonucleoside-diphosphate reductase subunit beta) Jul 2018
Automated Process Approved PF00268 (PF00268 Ribonucleotide reductase, small chain) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0015949 nucleobase-containing small molecule interconversion Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0009263 deoxyribonucleotide biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR026494
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR000358
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0009186 deoxyribonucleoside diphosphate metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000358
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005971 ribonucleoside-diphosphate reductase complex GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR026494
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0004748 ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000358
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0046914 transition metal ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR009078
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR009078
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name nrdF Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym JW2651 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK2670 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym ygaD Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved locus tag b2676 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product ribonucleoside-diphosphate reductase 2 subunit beta Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Oct 2021
Person Uncurated alternate product name ribonucleoside-diphosphate reductase 2, beta subunit Published Annotation - Database Name: GenProtEC Jan 2006
Automated Process Approved alternate product name ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like protein Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved alternate product name ribonucleoside-diphosphate reductase 2, beta chain, frag Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0008808: Trusted threshold=868.4; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000982
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR026494 Ribonucleoside-diphosphate reductase subunit beta Protein Sequence Similarity - InterPro Domain: IPR026494
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR012348 Ribonucleotide reductase-like Protein Sequence Similarity - InterPro Domain: IPR012348
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR009078 Ferritin-like superfamily Protein Sequence Similarity - InterPro Domain: IPR009078
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF00268 Ribonucleotide reductase, small chain Protein Sequence Similarity - PFAM Model Name: PF00268
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR000358 Ribonucleotide reductase small subunit family Protein Sequence Similarity - InterPro Domain: IPR000358
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Approved EC number 1.17.4.1 Published Annotation - Swiss-Prot Accession Number: P37146 Feb 2006
Person Uncurated MultiFun 1.7.33 (metabolism; central intermediary metabolism; nucleotide and nucleoside conversions) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG12381 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:947149 Published Annotation - Entrez Gene Database ID: 947149
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P37146 Published Annotation - Swiss-Prot Accession Number: P37146 Jan 2005
Automated Process Approved db xref UniProtKB/Swiss-Prot:P37146 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1789031 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0008808 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Central intermediary metabolism: Nucleotide interconversions Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note ribonucleoside-diphosphate reductase 2, beta chain, frag; GO_component: GO:0005737 - cytoplasm; GO_process: GO:0015949 - nucleobase, nucleoside and nucleotide interconversion Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC75723.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Unknown Predicted by PSORTb - PSORTb Final_Score: 2.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR000358
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO biological process GO:0015949 nucleobase-containing small molecule interconversion Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0009186 deoxyribonucleoside diphosphate metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000358
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO biological process GO:0009263 deoxyribonucleotide biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR026494
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005971 ribonucleoside-diphosphate reductase complex GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR026494
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0046914 transition metal ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR009078
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004748 ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000358
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR009078
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000982 nrdF CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0002103 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001785 nrdF CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001755 nrdF CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000819 nrdF CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001892 nrdF CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0002153 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0001003 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0003398 nrdF CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0000525 CDS
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0003497 nrdF CDS
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0004225 nrdF CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0005585 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0020532 nrdF CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0004988 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0304323 nrdF CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0002910 nrdF CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000981 nrdF CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0002870 nrdF CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008756 nrdF CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0002665 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008492 nrdF CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0002673 nrdF CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0001619 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0006550 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007371 nrdF CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007321 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0079379 nrdF CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0003056 nrdF CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0003565 nrdF2 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009693 nrdF CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009911 nrdF CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0003119 nrdF CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0007394 nrdF CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001243 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007259 nrdF CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005779 nrdF CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005255 nrdF CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009017 nrdF CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0008756 nrdF CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007441 nrdF CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006549 nrdF CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007373 nrdF CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0008191 nrdF CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0008052 nrdF CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0008275 nrdF CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008226 nrdF CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0027652 nrdF CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0006317 nrdF CDS
Automated Process Approved Go view Escherichia coli HS ADR-0007486 nrdF CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0001406 nrdF CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0002513 nrdF CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0002744 nrdF CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0003246 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0003158 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0003090 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0002985 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0177237 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0002981 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0002796 nrdF CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0133568 nrdF CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0000826 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0003045 nrdF CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0002882 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0003016 nrdF CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0001374 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0002292 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0003279 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0002307 nrdF CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0001692 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0003073 nrdF CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0001081 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0010764 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0000873 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0291345 nrdF CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0006119 nrdF CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0063633 nrdF CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001932 nrdF CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0002047 nrdF CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0004099 nrdF CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0008246 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0139669 nrdF CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0007092 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000169 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0003209 nrdF CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007371 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0008666 nrdF CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0008220 nrdF CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006598 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0007351 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008197 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006787 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0008056 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006474 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0007367 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005691 CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0003503 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007531 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0007823 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007028 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007917 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0111283 nrdF CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0084422 nrdF CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0003395 nrdF CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0098802 nrdF CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006494 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0009014 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006736 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0001963 CDS
Person Uncurated Go view Shigella boydii 227 ADV-0003122 nrdF CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0008616 nrdF CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005586 nrdF CDS
Person Uncurated Go view Shigella dysenteriae 197 ADU-0003285 nrdF CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0074052 nrdF CDS
Person Approved Go view Shigella flexneri 301 ABT-0088954 nrdF CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0003018 nrdF CDS
Person Approved Go view Shigella sonnei 046 ADD-0003090 nrdF CDS
Person Uncurated Go view Wigglesworthia morsitans AEQ-0000272 nrdF CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002015 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0002808 nrdF CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003073 nrdF CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002345 nrdF CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002067 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0240215 nrdF CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007659 CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002859 nrdF CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0006506 CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0000830 nrdF CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0124148 nrdF CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0004492 CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0005339 CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0004106 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0009343 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004716 CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030892 nrdF CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007217 CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0001375 nrdF CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0001938 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005328 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005018 CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0003054 nrdF CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0003672 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0001308 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0003166 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0002144 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2798502 to 2809461
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0008793alaECDSforward27991642799613Upstream
ABE-0008795ygaCCDScomplement27996502799994Upstream
ABE-0008799ygaMCDSforward28001462800475Upstream
ABE-0008802nrdHCDSforward28007232800968Upstream
ABE-0008804nrdICDSforward28009652801375Upstream
ABE-0008806nrdECDSforward28013482803492Upstream
ABE-0008808nrdFCDSforward28035022804461Matches
ABE-0008814proVCDSforward28048152806017Downstream
ABE-0008816proWCDSforward28060102807074Downstream
ABE-0008818proXCDSforward28071322808124Downstream
ABE-0285537repeat_regionforward28081312808214Downstream
ABE-0008822ygaY_1CDSpforward28083162808582Downstream
ABE-0285129ygaYpseudogeneforward28083162809493Downstream
ABE-0008824ygaY_2CDSpforward28086122809493Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.