Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0008814 (proV) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0008814 showshow history
Names
proV osrA JW2652 ECK2671 proU b2677
Product
ATP-binding component of an ABC superfamily glycine betaine transporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 2804815 2806017 1203 401
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR003439 (IPR003439 ABC transporter-like) Apr 2008
Automated Process Approved IPR003593 (IPR003593 AAA+ ATPase domain) Apr 2008
Automated Process Approved IPR005892 (IPR005892 Glycine betaine transport ATP-binding subunit) Apr 2008
Automated Process Approved IPR000644 (IPR000644 CBS domain) Apr 2008
Automated Process Approved IPR027417 (IPR027417 P-loop containing nucleoside triphosphate hydrolase) Jul 2018
Automated Process Approved PF00571 (PF00571 CBS domain) Jul 2018
Automated Process Approved PF00005 (PF00005 ABC transporter) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0006561 proline biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0031460 glycine betaine transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR005892
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0006865 amino acid transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005892
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005892
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0017111 nucleoside-triphosphatase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003593
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0015171 amino acid transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005892
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0000166 nucleotide binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003593
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016887 ATPase GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003439
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO molecular function GO:0015596 (OBSOLETE) glycine betaine/proline porter activity Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003439
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name proV Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym proU Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved synonym ECK2671 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym osrA Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved synonym JW2652 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b2677 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product ATP-binding component of an ABC superfamily glycine betaine transporter Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2008
Person Uncurated alternate product name glycine/betaine/proline transport protein (ABC superfamily, atp_bind) Published Annotation - Database Name: GenProtEC Jan 2006
Person Approved alternate product name ATP-binding component of transport system for glycine, betaine and proline Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Automated Process Approved alternate product name glycine betaine transporter subunit Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Protein Family
Automated Process Approved protein family IPR027417 P-loop containing nucleoside triphosphate hydrolase Protein Sequence Similarity - InterPro Domain: IPR027417
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF00571 CBS domain Protein Sequence Similarity - PFAM Model Name: PF00571
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF00005 ABC transporter Protein Sequence Similarity - PFAM Model Name: PF00005
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR003439 ABC transporter-like Protein Sequence Similarity - InterPro Domain: IPR003439
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR000644 CBS domain Protein Sequence Similarity - InterPro Domain: IPR000644
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR003593 AAA+ ATPase domain Protein Sequence Similarity - InterPro Domain: IPR003593
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR005892 Glycine betaine transport ATP-binding subunit Protein Sequence Similarity - InterPro Domain: IPR005892
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Automated Process Uncurated EC number 3.6.1.3 Published Annotation - Database Name: EC2GO: GO:0016887
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated MultiFun 4.3.A.1.a (transport; Primary Active Transporters; Pyrophosphate Bond (ATP, GTP, P2) Hydrolysis-driven Active Transporters; The ATP-binding Cassette (ABC) Superfamily + ABC-type Uptake Permeases; ABC superfamily ATP binding cytoplasmic component) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.S.80 (transport; substrate; glycine/betaine/proline) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.5.1.4 (metabolism; building block biosynthesis; amino acids; proline) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10771 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:947148 Published Annotation - Entrez Gene Database ID: 947148
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P14175 Published Annotation - Swiss-Prot Accession Number: P14175 Jan 2005
Automated Process Approved db xref UniProtKB/Swiss-Prot:P14175 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1789032 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0008814 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function transport; Transport of small molecules: Amino acids, amines Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note ATP-binding component of transport system for glycine, betaine and proline; GO_component: GO:0005737 - cytoplasm; GO_function: GO:0015596 - glycine betaine/proline porter activity; GO_process: GO:0006561 - proline biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC75724.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 9.12
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Uncurated GO biological process GO:0031460 glycine betaine transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR005892
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0006865 amino acid transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005892
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0006561 proline biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005892
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016887 ATPase GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003439
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0015171 amino acid transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005892
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0017111 nucleoside-triphosphatase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003593
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0000166 nucleotide binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003593
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003439
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO molecular function GO:0015596 (OBSOLETE) glycine betaine/proline porter activity Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000483 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001523 proV CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001634 proV CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000801 proV CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001755 proV CDS
Ortholog
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0003284 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0003399 proV CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0000523 proV CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0003498 proV_2 CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0004226 proV_2 CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0005410 CDS
Person Uncurated Go view Dickeya dadantii 3937 ABF-0015981 proV CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0003360 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0004987 proV CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0304326 proV CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0002911 proV CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000979 proV CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0002869 proV CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008755 proV CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0002667 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008491 proV CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0002674 proV CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0001618 proV CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0006549 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007372 proV CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007322 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0079380 proV CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0003057 proV CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0003566 proV CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009692 proV CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009910 proV CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0003120 proV CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0007395 proV CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007260 proV CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005780 proV CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005256 proV CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009018 proV CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0008757 proV CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007440 proV CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006550 proV CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007374 proV CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0008192 proV CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0008053 proV CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0008276 proV CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008227 proV CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0027653 proV CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0006318 proV CDS
Automated Process Approved Go view Escherichia coli HS ADR-0007487 proV CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0001405 CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0002745 proV CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0003247 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0003159 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0002986 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0177238 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0002982 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0002797 proV CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0133569 proV CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0000827 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0003046 proV CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0002887 proV CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0002136 proV CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0003017 proV CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0001402 proV CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0005405 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0002293 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0003280 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0002308 proV CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0001691 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0003074 proV CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0001080 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0010765 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0000872 CDS
Person Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0063810 proV CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001978 proV CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0002075 proV CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0004516 proV CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0008463 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0139666 proV CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0003110 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0007093 proV CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000168 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0003210 proV CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007372 proV CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0008669 proV CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0008223 proV CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006597 proV CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0007352 proV CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008198 proV CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006786 proV CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0008057 proV CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006475 proV CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0007368 proV CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005690 proV CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0002695 CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0002666 proV CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0003504 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007532 proV CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0007822 proV CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007029 proV CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007918 proV CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0003396 proV CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0098807 proV CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006493 proV CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0009013 proV CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006737 proV CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0001951 proV CDS
Person Approved Go view Shigella boydii 227 ADV-0003119 proV CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0008615 proV CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005585 proV CDS
Person Uncurated Go view Shigella dysenteriae 197 ADU-0003289 proV CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0074053 proV CDS
Person Approved Go view Shigella flexneri 301 ABT-0088955 proV CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0003017 proV CDS
Person Approved Go view Shigella sonnei 046 ADD-0003091 proV CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002014 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0002802 proV CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003074 proV2 CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002344 proV CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002066 CDS
Person Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0240214 proV2 CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007658 proV CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002858 proV CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0006507 proV CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0000831 proV CDS
Person Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0124142 proV CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0004493 proV CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0005338 proV CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0004105 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0009342 proV CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004715 proV CDS
Person Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030891 proV CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007216 proV CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0001374 proV CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0001939 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005329 proV CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005017 proV CDS
Person Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0003055 proV CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0003673 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0001307 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0003155 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0002145 proV CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB20877mutantTn5 InsertionRequest the StrainABE-0008814proVproV::Tn5KAN-I-SceI at position 1070 in Plus orientation ,+ pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2799815 to 2811017
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0008795ygaCCDScomplement27996502799994Upstream
ABE-0008799ygaMCDSforward28001462800475Upstream
ABE-0008802nrdHCDSforward28007232800968Upstream
ABE-0008804nrdICDSforward28009652801375Upstream
ABE-0008806nrdECDSforward28013482803492Upstream
ABE-0008808nrdFCDSforward28035022804461Upstream
ABE-0008814proVCDSforward28048152806017Matches
ABE-0008816proWCDSforward28060102807074Overlaps Downstream
ABE-0008818proXCDSforward28071322808124Downstream
ABE-0285537repeat_regionforward28081312808214Downstream
ABE-0008822ygaY_1CDSpforward28083162808582Downstream
ABE-0285129ygaYpseudogeneforward28083162809493Downstream
ABE-0008824ygaY_2CDSpforward28086122809493Downstream
ABE-0008829ygaZCDSforward28096172810354Downstream
ABE-0008831ygaHCDSforward28103442810679Downstream
ABE-0008834mprACDSforward28107702811300Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.