Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0008816 (proW) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0008816 showshow history
Names
proW osrA JW2653 ECK2672 proU b2678
Product
membrane component of an ABC superfamily glycine betaine transporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 2806010 2807074 1065 355
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000983
EnteroFam0008816: Trusted threshold=932.5; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR000515 (IPR000515 ABC transporter type 1, transmembrane domain MetI-like) Apr 2008
Automated Process Approved IPR035906 (IPR035906 MetI-like superfamily) Jul 2018
Automated Process Approved PF00528 (PF00528 Binding-protein-dependent transport system inner membrane component) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0006561 proline biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0055085 transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR000515
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000515
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000515
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000515
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO molecular function GO:0015596 (OBSOLETE) glycine betaine/proline porter activity Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name proW Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym ECK2672 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym osrA Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved synonym JW2653 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym proU Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved locus tag b2678 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product membrane component of an ABC superfamily glycine betaine transporter Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Oct 2021
Person Approved alternate product name high-affinity transport system for glycine betaine and proline Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Uncurated alternate product name glycine/betaine/proline transport protein (ABC superfamily, membrane) Published Annotation - Database Name: GenProtEC Jan 2006
Automated Process Approved alternate product name glycine betaine transporter subunit Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Protein Family
Person Approved EnteroFam EnteroFam0008816: Trusted threshold=932.5; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000983
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family PF00528 Binding-protein-dependent transport system inner membrane component Protein Sequence Similarity - PFAM Model Name: PF00528
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR035906 MetI-like superfamily Protein Sequence Similarity - InterPro Domain: IPR035906
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR000515 ABC transporter type 1, transmembrane domain MetI-like Protein Sequence Similarity - InterPro Domain: IPR000515
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.3.A.1.m (transport; Primary Active Transporters; Pyrophosphate Bond (ATP, GTP, P2) Hydrolysis-driven Active Transporters; The ATP-binding Cassette (ABC) Superfamily + ABC-type Uptake Permeases; ABC superfamily, membrane component) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.3 (location of gene products; inner membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.5.1.4 (metabolism; building block biosynthesis; amino acids; proline) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.S.80 (transport; substrate; glycine/betaine/proline) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10772 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:947145 Published Annotation - Entrez Gene Database ID: 947145
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref UniProtKB/Swiss-Prot:P14176 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1789033 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0008816 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P14176 Published Annotation - Swiss-Prot Accession Number: P14176 Jan 2005
Person Approved function transport; Transport of small molecules: Amino acids, amines Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note high-affinity transport system for glycine betaine and proline; membrane component of ABC superfamily; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane; GO_function: GO:0015596 - glycine betaine/proline porter activity; GO_process: GO:0006561 - proline biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC75725.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Uncurated GO biological process GO:0055085 transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR000515
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000515
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0006561 proline biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000515
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO molecular function GO:0015596 (OBSOLETE) glycine betaine/proline porter activity Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000515
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000983 proW CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000484 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001456 proW CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001686 proW CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000771 proW CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001779 proW CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0000402 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0003285 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0003400 CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0000522 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0003499 proW CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0004227 proW CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0005409 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0015980 proW CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0003361 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0004986 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0304331 proW CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0002912 proW CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000978 proW CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0002868 proW CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008754 proW CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0002668 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008490 proW CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0002675 proW CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0001617 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0006548 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007373 proW CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007323 ProW CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0079381 proW CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0003058 CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0003567 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009691 proW CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009909 proW CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0003121 proW CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0007396 proW CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001245 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007261 proW CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005781 proW CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005257 proW CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009019 proW CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0008758 proW CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007439 proW CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006551 proW CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007375 proW CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0008193 proW CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0008054 proW CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0008277 proW CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008228 proW CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0027654 proW CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0006319 proW CDS
Automated Process Approved Go view Escherichia coli HS ADR-0007488 proW CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0001404 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0002514 proW CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0002746 proW CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0003248 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0003160 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0003093 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0002987 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0177239 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0002983 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0002798 proW CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0133570 proW CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0000828 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0003047 proW CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0002888 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0002134 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0003018 proW CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0001403 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0005404 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0002294 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0003281 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0002309 proW CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0001690 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0003075 proW CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0001079 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0010766 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0000870 CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0063811 proW CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001977 proW CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0004172 proW CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0004517 proW CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0008464 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0139664 proW CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0003109 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0007094 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000167 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0003211 proW CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007373 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0008674 proW CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0008228 proW CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006596 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0007353 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008199 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006785 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0008058 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006476 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0007369 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005689 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0002696 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0002667 proW CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0003505 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007533 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0007821 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007030 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007919 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0111290 proW CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0084424 proW CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0003397 proW CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0098810 proW CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006492 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0009012 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006738 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0001950 CDS
Person Approved Go view Shigella boydii 227 ADV-0003118 proW CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0008614 proW CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005584 proW CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0003290 proW CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0074054 proW CDS
Person Approved Go view Shigella flexneri 301 ABT-0088956 proW CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0003016 proW CDS
Person Approved Go view Shigella sonnei 046 ADD-0003092 proW CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002013 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0002798 proW CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003075 proW CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002343 proW CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002065 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0240207 proW CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007657 proW CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002857 proW CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0006508 proW CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0000832 proW CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0124133 proW CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0004494 proW CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0005337 proW CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0004104 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0009341 proW CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004714 proW CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030890 proW CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007215 proW CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0001373 proW CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0001940 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005330 proW CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005016 proW CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0003056 proW CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0003674 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0001306 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0003149 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0002146 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB20878mutantTn5 InsertionRequest the StrainABE-0008816proWproW::Tn5KAN-I-SceI at position 835 in Plus orientation ,- pKD465Blattner Laboratory
FB20879mutantTn5 InsertionRequest the StrainABE-0008816proWproW::Tn5KAN-I-SceI at position 835 in Plus orientation ,+ pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2801010 to 2812074
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0008804nrdICDSforward28009652801375Upstream
ABE-0008806nrdECDSforward28013482803492Upstream
ABE-0008808nrdFCDSforward28035022804461Upstream
ABE-0008814proVCDSforward28048152806017Overlaps Upstream
ABE-0008816proWCDSforward28060102807074Matches
ABE-0008818proXCDSforward28071322808124Downstream
ABE-0285537repeat_regionforward28081312808214Downstream
ABE-0008822ygaY_1CDSpforward28083162808582Downstream
ABE-0285129ygaYpseudogeneforward28083162809493Downstream
ABE-0008824ygaY_2CDSpforward28086122809493Downstream
ABE-0008829ygaZCDSforward28096172810354Downstream
ABE-0008831ygaHCDSforward28103442810679Downstream
ABE-0008834mprACDSforward28107702811300Downstream
ABE-0008838emrACDSforward28114272812599Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.