Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0008818 (proX) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0008818 showshow history
Names
proX osrA JW2654 ECK2673 proU b2679
Product
periplasmic-binding component of an ABC superfamily glycine betaine transporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 2807132 2808124 993 331
Sequence

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000984
EnteroFam0008818: Trusted threshold=866.7; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR007210 (IPR007210 ABC-type glycine betaine transport system, substrate-binding domain) Apr 2008
Automated Process Approved PF04069 (PF04069 Substrate binding domain of ABC-type glycine betaine transport system) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007210
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0016052 carbohydrate catabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: GO:MultiFun2GO
Reference: Escherichia coli K-12 MG1655 		Nov 2006
Person Uncurated GO biological process GO:0006970 response to osmotic stress GO Inferred from Electronic Annotation - Database Name:Identifier: GO:MultiFun2GO
Reference: Escherichia coli K-12 MG1655 		Nov 2006
Automated Process Uncurated GO biological process GO:0055085 transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR007210
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO biological process GO:0006561 proline biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: GO:MultiFun2GO
Reference: Escherichia coli K-12 MG1655 		Nov 2006
Person Uncurated GO biological process GO:0006545 glycine biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: GO:MultiFun2GO
Reference: Escherichia coli K-12 MG1655 		Nov 2006
Person Uncurated GO biological process GO:0006578 amino-acid betaine biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: GO:MultiFun2GO
Reference: Escherichia coli K-12 MG1655 		Nov 2006
Automated Process Uncurated GO cellular component GO:0043190 ATP-binding cassette (ABC) transporter complex GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR007210
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO cellular component GO:0030288 outer membrane-bounded periplasmic space GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0042597 periplasmic space GO Inferred from Electronic Annotation - Database Name:Identifier: GO:MultiFun2GO
Reference: Escherichia coli K-12 MG1655 		Nov 2006
Automated Process Uncurated GO molecular function GO:0022857 transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR007210
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0005488 binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007210
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007210
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO molecular function GO:0042626 ATPase-coupled transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: GO:MultiFun2GO
Reference: Escherichia coli K-12 MG1655 		Nov 2006
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name proX Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Automated Process Approved synonym osrA Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved synonym JW2654 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK2673 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym proU Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved locus tag b2679 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product periplasmic-binding component of an ABC superfamily glycine betaine transporter Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Oct 2021
Person Approved alternate product name high-affinity transport system for glycine betaine and proline Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Automated Process Approved alternate product name glycine betaine transporter subunit Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Protein Family
Person Approved EnteroFam EnteroFam0008818: Trusted threshold=866.7; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000984
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family PF04069 Substrate binding domain of ABC-type glycine betaine transport system Protein Sequence Similarity - PFAM Model Name: PF04069
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR007210 ABC-type glycine betaine transport system, substrate-binding domain Protein Sequence Similarity - InterPro Domain: IPR007210
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Uncurated MultiFun 1.1.1 (metabolism; carbon utilization; carbon compounds) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.7.18 (metabolism; central intermediary metabolism; betaine biosynthesis) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.2 (location of gene products; periplasmic space) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.S.80 (transport; substrate; glycine/betaine/proline) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.5.1.4 (metabolism; building block biosynthesis; amino acids; proline) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 5.5.1 (cell processes; adaptation to stress; osmotic pressure) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.5.1.10 (metabolism; building block biosynthesis; amino acids; glycine) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.3.A.1.p (transport; Primary Active Transporters; Pyrophosphate Bond (ATP, GTP, P2) Hydrolysis-driven Active Transporters; The ATP-binding Cassette (ABC) Superfamily + ABC-type Uptake Permeases; ABC superfamily, periplasmic binding component) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10773 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0008818 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0AFM2 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:947165 Published Annotation - Entrez Gene Database ID: 947165
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref GI:1789034 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P0AFM2 Published Annotation - Swiss-Prot Accession Number: P0AFM2 Jan 2006
Person Approved function transport; Osmotic adaptation Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note high-affinity transport system for glycine betaine and proline; periplasmic-binding component of ABC superfamily; GO_component: GO:0042597 - periplasmic space; GO_function: GO:0015596 - glycine betaine/proline porter activity; GO_process: GO:0016052 - carbohydrate catabolic process; GO_process: GO:0006561 - proline biosynthetic process; GO_process: GO:0006545 - glycine biosynthetic process; GO_process: GO:0006578 - betaine biosynthetic process; GO_process: GO:0006970 - response to osmotic stress Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC75726.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved regulation expression regulated by dsrA; expression is increased in strain overexpressing dsrA Experimental - PubMed ID: 15342588
Reference: Escherichia coli K-12 M182 		Oct 2005
Automated Process Uncurated subcellular localization Periplasmic Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007210
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO biological process GO:0055085 transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR007210
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO biological process GO:0006970 response to osmotic stress GO Inferred from Electronic Annotation - Database Name:Identifier: GO:MultiFun2GO
Reference: Escherichia coli K-12 MG1655 		Nov 2006
Person Uncurated GO biological process GO:0006545 glycine biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: GO:MultiFun2GO
Reference: Escherichia coli K-12 MG1655 		Nov 2006
Person Uncurated GO biological process GO:0016052 carbohydrate catabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: GO:MultiFun2GO
Reference: Escherichia coli K-12 MG1655 		Nov 2006
Person Uncurated GO biological process GO:0006561 proline biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: GO:MultiFun2GO
Reference: Escherichia coli K-12 MG1655 		Nov 2006
Person Uncurated GO biological process GO:0006578 amino-acid betaine biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: GO:MultiFun2GO
Reference: Escherichia coli K-12 MG1655 		Nov 2006
Automated Process Uncurated GO cellular component GO:0043190 ATP-binding cassette (ABC) transporter complex GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR007210
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO cellular component GO:0042597 periplasmic space GO Inferred from Electronic Annotation - Database Name:Identifier: GO:MultiFun2GO
Reference: Escherichia coli K-12 MG1655 		Nov 2006
Automated Process Uncurated GO cellular component GO:0030288 outer membrane-bounded periplasmic space GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007210
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005488 binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007210
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO molecular function GO:0042626 ATPase-coupled transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: GO:MultiFun2GO
Reference: Escherichia coli K-12 MG1655 		Nov 2006
Automated Process Uncurated GO molecular function GO:0022857 transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR007210
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000984 proX CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001814 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001669 proX CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001733 proX CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000067 proX CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001800 proX CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0000401 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0003286 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0003401 proX CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0000521 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0003500 proX CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0004228 proX CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0005407 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0015979 proX CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0003362 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0004985 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0304335 proX CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0002913 proX CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000977 proX CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0002867 proX CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008753 proX CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0002669 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008489 proX CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0002676 proX CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0001616 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0006546 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007374 proX CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007324 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0079382 proX CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0003059 proX CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0003568 proX CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009690 proX CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009908 proX CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0003122 proX CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0007397 proX CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001246 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007262 proX CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005782 proX CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005258 proX CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009020 proX CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0008759 proX CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007438 proX CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006552 proX CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007376 proX CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0008194 proX CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0008055 proX CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0008278 proX CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008229 proX CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0027655 proX CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0006320 proX CDS
Automated Process Approved Go view Escherichia coli HS ADR-0007489 proX CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0001403 proX CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0002515 proX CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0002747 proX CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0003249 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0003161 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0003094 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0002988 proX CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0177240 proX CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0002984 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0002799 proX CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0133571 proX CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0000829 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0003048 proX CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0002890 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0002133 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0003019 proX CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0001404 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0005402 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0002295 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0003282 proX CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0002310 proX CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0001689 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0003076 proX CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0001078 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0010767 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0000869 CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0063812 proX CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001990 proX CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0002076 proX CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0004518 proX CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0008465 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0139662 proX CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0003108 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0007095 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000166 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0003212 proX CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007374 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0008678 proX CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0008232 proX CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006595 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0007354 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008200 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006784 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0008059 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006477 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0007370 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005688 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0002697 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0002668 proX CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0003506 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007534 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0007820 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007031 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007920 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0111294 proX CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0084425 proX CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0003398 proX CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0098813 proX CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006491 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0009011 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006739 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0001949 CDS
Person Approved Go view Shigella boydii 227 ADV-0003117 proX CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0008613 proX CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005583 proX CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0074055 proX CDS
Person Approved Go view Shigella flexneri 301 ABT-0088957 proX CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0003015 proX CDS
Person Approved Go view Shigella sonnei 046 ADD-0003093 proX CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002012 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0002796 proU CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003076 proX CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002342 proX CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002064 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0240205 proX CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007656 proX CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002855 proX CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0006509 proX CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0000833 proX CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0124132 proX CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0004495 proX CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0005336 proX CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0004103 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0009340 proX CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004713 proX CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030889 proX CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007214 proX CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0001371 proX CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0001941 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005331 proX CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005015 proX CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0003057 proX CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0003675 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0001304 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0003146 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0002147 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2802132 to 2813124
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0008806nrdECDSforward28013482803492Upstream
ABE-0008808nrdFCDSforward28035022804461Upstream
ABE-0008814proVCDSforward28048152806017Upstream
ABE-0008816proWCDSforward28060102807074Upstream
ABE-0008818proXCDSforward28071322808124Matches
ABE-0285537repeat_regionforward28081312808214Downstream
ABE-0008822ygaY_1CDSpforward28083162808582Downstream
ABE-0285129ygaYpseudogeneforward28083162809493Downstream
ABE-0008824ygaY_2CDSpforward28086122809493Downstream
ABE-0008829ygaZCDSforward28096172810354Downstream
ABE-0008831ygaHCDSforward28103442810679Downstream
ABE-0008834mprACDSforward28107702811300Downstream
ABE-0008838emrACDSforward28114272812599Downstream
ABE-0008840emrBCDSforward28126162814154Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.