Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0008845 (gshA) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0008845 showshow history
Names
gshA gshI JW2663 ECK2683 b2688
Product
gamma-glutamate-cysteine ligase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 2814883 2816439 1557 519
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000988
EnteroFam0008845: Trusted threshold=1406; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR006334 (IPR006334 Glutamate--cysteine ligase, monofunctional) Apr 2008
Automated Process Approved IPR007370 (IPR007370 Glutamate--cysteine ligase) Apr 2008
Automated Process Approved IPR014746 (IPR014746 Glutamine synthetase/guanido kinase, catalytic domain) Jul 2018
Automated Process Approved PF04262 (PF04262 Glutamate-cysteine ligase) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006750 glutathione biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006334
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO biological process GO:0006750 glutathione biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Uncurated GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR014746
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0004357 glutamate-cysteine ligase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006334
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name gshA Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym JW2663 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym gshI Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved synonym ECK2683 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b2688 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product gamma-glutamate-cysteine ligase Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name gamma-glutamate-cysteine ligase Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Automated Process Approved alternate product name glutamate-cysteine ligase Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Protein Family
Person Approved EnteroFam EnteroFam0008845: Trusted threshold=1406; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000988
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family PF04262 Glutamate-cysteine ligase Protein Sequence Similarity - PFAM Model Name: PF04262
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR007370 Glutamate--cysteine ligase Protein Sequence Similarity - InterPro Domain: IPR007370
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR014746 Glutamine synthetase/guanido kinase, catalytic domain Protein Sequence Similarity - InterPro Domain: IPR014746
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR006334 Glutamate--cysteine ligase, monofunctional Protein Sequence Similarity - InterPro Domain: IPR006334
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Approved EC number 6.3.2.2 Published Annotation - Swiss-Prot Accession Number: P0A6W9 Feb 2006
Person Uncurated MultiFun 1.5.3.10 (metabolism; building block biosynthesis; cofactor, small molecule carrier; glutathione) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0008845 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:944881 Published Annotation - Entrez Gene Database ID: 944881
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref GI:1789044 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P0A6W9 Published Annotation - Swiss-Prot Accession Number: P0A6W9 Jan 2006
Automated Process Approved db xref EcoGene:EG10418 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0A6W9 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Biosynthesis of cofactors, carriers: Thioredoxin, glutaredoxin, glutathione Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note GO_process: GO:0006750 - glutathione biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC75735.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 8.96
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0006750 glutathione biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006334
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO biological process GO:0006750 glutathione biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Uncurated GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR014746
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0004357 glutamate-cysteine ligase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006334
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000988 gshA CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000212 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000400 gshA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000455 gshA CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000659 gshA CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001020 gshA CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0000256 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0001780 CDS
Person Uncurated Go view Buchnera aphidicola APS ABZ-0129677 gshA CDS
Person Uncurated Go view Buchnera aphidicola Bp ABW-0105094 gshA CDS
Person Uncurated Go view Buchnera aphidicola Sg [T] ABV-0104518 gshA CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0003409 gshA CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0000512 gshA CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0003511 gshA CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0004239 gshA CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0005553 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0020485 gshA CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0003244 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0004977 gshA CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0304453 gshA CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0000938 gshA CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002753 gshA CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0002857 gshA CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008742 gshA CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0002677 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008478 gshA CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0002687 gshA CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0001605 gshA CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0006536 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007385 gshA CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007335 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0079395 gshA CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0003069 gshA CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0003578 gshA CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009679 gshA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009897 gshA CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0003137 gshA CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0007408 gshA CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001255 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007273 gshA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005793 gshA CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005269 gshA CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009031 gshA CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0008770 gshA CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007427 gshA CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006563 gshA CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007387 gshA CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0008205 gshA CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0008066 gshA CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0008289 gshA CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008240 gshA CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0027663 gshA CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0006331 gshA CDS
Automated Process Approved Go view Escherichia coli HS ADR-0007499 gshA CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0001393 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0002523 gshA CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0002757 gshA CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0003257 gshA CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0003173 gshA CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0003102 gshA CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0003000 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0002993 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0002808 gshA CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0133579 gshA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0000838 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0003059 gshA CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0000431 gshA CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0001532 gshA CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0003028 gshA CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0001410 gshA CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0005532 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0002325 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0002546 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0002349 gshA CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0001653 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0003114 gshA CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0001040 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0010797 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0000780 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0291045 gshA CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0006153 gshA CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0063665 gshA CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0003575 CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0003086 gshA CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0004236 gshA CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0008331 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0139588 gshA CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0000327 gshA CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0007104 gshA CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000159 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0003220 gshA CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007383 gshA CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0008702 gshA CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0008254 gshA CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006586 gshA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0007363 gshA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008209 gshA CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006775 gshA CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0008068 gshA CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006486 gshA CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0007379 gshA CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005679 gshA CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0002705 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0002676 gshA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0003518 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007543 gshA CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0007811 gshA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007040 gshA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007929 gshA CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0111311 gshA CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0084432 gshA CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0003408 gshA CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0098835 gshA CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006482 gshA CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0009001 gshA CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006748 gshA CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0000245 gshA CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0267195 gshA CDS
Person Approved Go view Shigella boydii 227 ADV-0003109 gshA CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0008600 gshA CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005573 gshA CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0003303 gshA CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0074065 gshA CDS
Person Uncurated Go view Shigella flexneri 301 ABT-0088964 gshA CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0003007 gshA CDS
Person Approved Go view Shigella sonnei 046 ADD-0003101 gshA CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0000613 VC0556 CDS
Person Uncurated Go view Wigglesworthia morsitans AEQ-0000404 gshA CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0002224 gshA CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0003050 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0002582 b2688 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003981 gshA CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003718 gshA CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003307 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0235090 gshA CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004997 gshA CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0003411 gshA CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007081 gshA CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0004050 gshA CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0126426 gshA CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006517 gshA CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006007 gshA CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001469 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005987 gshA CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004343 gshA CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030529 gshA CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007449 gshA CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000969 gshA CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003665 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0004836 gshA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007244 gshA CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0000876 gshA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0001025 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0003994 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0003127 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0002153 gshA CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2809883 to 2821439
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0008829ygaZCDSforward28096172810354Downstream
ABE-0008831ygaHCDSforward28103442810679Downstream
ABE-0008834mprACDSforward28107702811300Downstream
ABE-0008838emrACDSforward28114272812599Downstream
ABE-0008840emrBCDSforward28126162814154Downstream
ABE-0008842luxSCDScomplement28142182814733Downstream
ABE-0047262micAncRNAforward28148022814879Downstream
ABE-0008845gshACDScomplement28148832816439Matches
ABE-0008847yqaACDScomplement28165122816940Upstream
ABE-0008850yqaBCDScomplement28169372817503Upstream
ABE-0008856argQtRNAcomplement28177842817860Upstream
ABE-0008858argZtRNAcomplement28180592818135Upstream
ABE-0008860argYtRNAcomplement28181982818274Upstream
ABE-0008862argVtRNAcomplement28184732818549Upstream
ABE-0008864serVtRNAcomplement28185532818645Upstream
ABE-0008866csrACDScomplement28189612819146Upstream
ABE-0008869alaSCDScomplement28193812822011Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.