Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0008850 (yqaB) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0008850 showshow history
Names
yqaB JW2665 ECK2685 b2690
Product
fructose-1-P and 6-phosphogluconate phosphatase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 2816937 2817503 567 189
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000990
EnteroFam0008850: Trusted threshold=466; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR005833 (IPR005833 (DEPRECATED) Haloacid dehalogenase/epoxide hydrolase) Apr 2008
Automated Process Approved IPR010976 (IPR010976 Beta-phosphoglucomutase hydrolase) Apr 2008
Automated Process Approved IPR006402 (IPR006402 (DEPRECATED) HAD-superfamily hydrolase, subfamily IA, variant 3) Apr 2008
Automated Process Approved IPR005834 (IPR005834 (DEPRECATED) Haloacid dehalogenase-like hydrolase) Apr 2008
Automated Process Approved IPR006439 (IPR006439 HAD hydrolase, subfamily IA) Jul 2018
Automated Process Approved IPR036412 (IPR036412 HAD-like superfamily) Jul 2018
Automated Process Approved PF13419 (PF13419 Haloacid dehalogenase-like hydrolase) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005833
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005834
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016787 hydrolase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005833
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name yqaB Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym ECK2685 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW2665 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b2690 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product fructose-1-P and 6-phosphogluconate phosphatase Experimental - PubMed ID: 15808744
Reference: Escherichia coli DH5-alpha 		Jan 2007
Protein Family
Person Approved EnteroFam EnteroFam0008850: Trusted threshold=466; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000990
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR010976 Beta-phosphoglucomutase hydrolase Protein Sequence Similarity - InterPro Domain: IPR010976
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR006402 (DEPRECATED) HAD-superfamily hydrolase, subfamily IA, variant 3 Protein Sequence Similarity - InterPro Domain: IPR006402
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR005833 (DEPRECATED) Haloacid dehalogenase/epoxide hydrolase Protein Sequence Similarity - InterPro Domain: IPR005833
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR005834 (DEPRECATED) Haloacid dehalogenase-like hydrolase Protein Sequence Similarity - InterPro Domain: IPR005834
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF13419 Haloacid dehalogenase-like hydrolase Protein Sequence Similarity - PFAM Model Name: PF13419
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR006439 HAD hydrolase, subfamily IA Protein Sequence Similarity - InterPro Domain: IPR006439
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR036412 HAD-like superfamily Protein Sequence Similarity - InterPro Domain: IPR036412
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Approved EC number 3.1.3.- Published Annotation - Swiss-Prot Accession Number: P77475 Feb 2006
Automated Process Uncurated EC number 3.-.-.- Published Annotation - Database Name: EC2GO: GO:0016787
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P77475 Published Annotation - Swiss-Prot Accession Number: P77475 Jan 2005
Automated Process Approved db xref GeneID:945776 Published Annotation - Entrez Gene Database ID: 945776
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref GI:1789046 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P77475 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0008850 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG13530 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Uncurated function catalyzes the dephosphorylation of the artificial chromogenic substrate p-nitrophenyl phosphate (pNPP) and of the natural substrates fructose 1-phosphate and 6-phosphogluconate Published Annotation - GenBank Accession Number: 15808744
Reference: Escherichia coli DH5-alpha 		Jan 2007
Automated Process Approved note putative phosphatase Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC75737.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 8.96
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005833
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005834
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016787 hydrolase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005833
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000990 yqaB CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000213 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001488 yqaB CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001776 yqaB CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001219 yqaB CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001848 yqaB CDS
Ortholog
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0001782 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0003411 yqaB CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0000510 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0003513 yqaB CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0004241 yqaB CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0005551 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0019318 yqaB CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0003246 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0004975 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0304458 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0000936 yqaB CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002755 yqaB CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0002855 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008740 CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0002679 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008476 CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0002689 yqaB CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0001603 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0006533 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007387 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007337 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0079397 yqaB CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0003071 yqaB CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0003580 yqaB CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009677 CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009895 CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0003139 yqaB CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0007410 CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001257 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007275 CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005795 CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005271 CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009033 CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0008772 CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007425 CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006565 CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0008207 CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0008068 CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0008291 CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008242 CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0027665 yqaB CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0006333 yqaB CDS
Automated Process Approved Go view Escherichia coli HS ADR-0007501 CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0001391 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0002525 yqaB CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0002759 yqaB CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0003259 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0003175 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0003104 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0003002 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0177255 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0002995 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0002810 CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0133581 yqaB CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0000840 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0003061 yqaB CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0000429 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0001530 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0003030 yqaB CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0001412 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0005529 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0002327 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0002548 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0002351 yqaB CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0001651 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0003116 yqaB CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0001038 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0010799 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0000782 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0291047 yqaB CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0006154 yqaB CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0063667 yqaB CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001947 CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0000873 CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0004238 yqaB CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0008333 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0007106 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000157 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0003222 yqaB CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007385 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0008707 yqaB CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0008259 yqaB CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006584 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0007365 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008211 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006773 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0008070 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006488 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0007381 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005677 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0002707 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0002678 yqaB CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0003520 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007545 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0007809 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007042 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007931 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0111314 yqaB CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0084434 yqaB CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0003410 yqaB CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0098840 yqaB CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006480 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0008999 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006750 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0000243 CDS
Person Uncurated Go view Shigella boydii 227 ADV-0003107 yqaB CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0008598 CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005571 CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0003305 yqaB CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0074067 yqaB CDS
Person Approved Go view Shigella flexneri 301 ABT-0088966 yqaB CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0003005 yqaB CDS
Person Approved Go view Shigella sonnei 046 ADD-0003103 yqaB CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0003552 VCA0662 CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0003048 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0002577 yqaB CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003979 yqaB CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003716 yqaB CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003309 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0235084 yqaB CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004999 CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0003408 yqaB CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007083 CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0004048 CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0126433 yqaB CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006515 CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006005 CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001468 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005985 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004341 CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030527 yqaB CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007447 CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000966 yqaB CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003662 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0004834 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007246 CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0000874 yqaB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0001022 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0003997 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0003121 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0002155 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB22654mutantTn5 InsertionRequest the StrainABE-0008850yqaByqaB::Tn5KAN-I-SceI at position 467 in Plus orientation ,+ pKD460Blattner Laboratory
FB23191mutantTn5 InsertionRequest the StrainABE-0008850yqaByqaB::Tn5KAN-I-SceI at position 467 in Plus orientation ,- pKD465Tim Durfee (durf@genome.wisc.edu)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2811937 to 2822503
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0008838emrACDSforward28114272812599Downstream
ABE-0008840emrBCDSforward28126162814154Downstream
ABE-0008842luxSCDScomplement28142182814733Downstream
ABE-0047262micAncRNAforward28148022814879Downstream
ABE-0008845gshACDScomplement28148832816439Downstream
ABE-0008847yqaACDScomplement28165122816940Overlaps Downstream
ABE-0008850yqaBCDScomplement28169372817503Matches
ABE-0008856argQtRNAcomplement28177842817860Upstream
ABE-0008858argZtRNAcomplement28180592818135Upstream
ABE-0008860argYtRNAcomplement28181982818274Upstream
ABE-0008862argVtRNAcomplement28184732818549Upstream
ABE-0008864serVtRNAcomplement28185532818645Upstream
ABE-0008866csrACDScomplement28189612819146Upstream
ABE-0008869alaSCDScomplement28193812822011Upstream
ABE-0008872recXCDScomplement28221392822639Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.