Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0008885 (mltB) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0008885 showshow history
Names
mltB JW2671 ECK2696 slt b2701
Product
membrane-bound lytic murein transglycosylase B
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 2824491 2825576 1086 362
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000996
EnteroFam0008885: Trusted threshold=925; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR011757 (IPR011757 Lytic transglycosylase MltB) Apr 2008
Automated Process Approved IPR031304 (IPR031304 Transglycosylase SLT domain 2) Jul 2018
Automated Process Approved IPR023346 (IPR023346 Lysozyme-like domain superfamily) Jul 2018
Automated Process Approved PF13406 (PF13406 Transglycosylase SLT domain) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0009252 peptidoglycan biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0009279 cell outer membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name mltB Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym slt Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved synonym ECK2696 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW2671 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b2701 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product membrane-bound lytic murein transglycosylase B Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name membrane-bound lytic murein transglycosylase B Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0008885: Trusted threshold=925; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000996
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR011757 Lytic transglycosylase MltB Protein Sequence Similarity - InterPro Domain: IPR011757
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR031304 Transglycosylase SLT domain 2 Protein Sequence Similarity - InterPro Domain: IPR031304
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF13406 Transglycosylase SLT domain Protein Sequence Similarity - PFAM Model Name: PF13406
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR023346 Lysozyme-like domain superfamily Protein Sequence Similarity - InterPro Domain: IPR023346
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Approved EC number 3.2.1.- Published Annotation - Swiss-Prot Accession Number: P41052 Feb 2006
Person Uncurated MultiFun 6.2 (cell structure; peptidoglycan (murein)) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 5.1 (cell processes; cell division) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.6.7 (metabolism; macromolecules (cellular constituent) biosynthesis; peptidoglycan (murein)) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.4 (location of gene products; outer membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1789053 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P41052 Published Annotation - Swiss-Prot Accession Number: P41052 Jan 2005
Automated Process Approved db xref GeneID:947184 Published Annotation - Entrez Gene Database ID: 947184
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref UniProtKB/Swiss-Prot:P41052 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0008885 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG12699 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Murein sacculus, peptidoglycan Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0009279 - cell outer membrane; GO_process: GO:0009252 - peptidoglycan biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC75743.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Uncurated GO biological process GO:0009252 peptidoglycan biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO cellular component GO:0009279 cell outer membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000996 mltB CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000703 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001674 mltB CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001834 mltB CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001524 mltB CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001853 mltB CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0003343 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0001654 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0003421 mltB CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0000500 mltB CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0003524 mltB CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0004252 mltB CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0008393 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0016459 mltB CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0000758 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0004965 mltB CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0304480 mltB CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0000930 mltB CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002765 mltB CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0002844 mltB CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008287 mltB CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0002690 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008463 mltB CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0002695 mltB CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0001594 mltB CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0006521 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007400 mltB CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007350 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0079411 mltB CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0003083 mltB CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0003591 mltB CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0008183 mltB CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008802 mltB CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0003150 mltB CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0007422 mltB CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001263 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007287 mltB CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005807 mltB CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005283 mltB CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0008089 mltB CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0008784 mltB CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007413 mltB CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006578 mltB CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007402 mltB CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0008220 mltB CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0008488 mltB CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007939 mltB CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008255 mltB CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0027677 mltB CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0006344 mltB CDS
Automated Process Approved Go view Escherichia coli HS ADR-0007512 mltB CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0003220 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0002530 mltB CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0002770 mltB CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0003265 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0003181 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0003159 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0003015 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0177262 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0003006 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0002822 mltB CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0133592 mltB CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0000846 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0003072 mltB CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0000419 mltB CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0001524 mltB CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0003045 mltB CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0001418 mltB CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0008213 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0002336 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0002558 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0002364 mltB CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0001643 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0003129 mltB CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0001025 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0010808 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0000791 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0291056 mltB CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0006168 mltB CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0061329 mltB CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002823 mltB CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0001490 mltB CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0001569 mltB CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0005621 CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0004899 mltB CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0007118 mltB CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000144 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0003237 mltB CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007396 mltB CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0008729 mltB CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0008281 mltB CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006572 mltB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0007377 mltB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008826 mltB CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0005375 mltB CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005392 mltB CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006500 mltB CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0007392 mltB CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005667 mltB CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0002717 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0002688 mltB CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0003535 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007556 mltB CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005668 mltB CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007054 mltB CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0005263 mltB CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0111336 mltB CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0084449 mltB CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0003425 mltB CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0098867 mltB CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006468 mltB CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0006813 mltB CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008208 mltB CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0002309 mltB CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0264722 CDS
Person Approved Go view Shigella boydii 227 ADV-0003097 mltB CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0008588 mltB CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0003315 mltB CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0074079 mltB CDS
Person Approved Go view Shigella flexneri 301 ABT-0088978 mltB CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0002995 mltB CDS
Person Approved Go view Shigella sonnei 046 ADD-0003114 mltB CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001790 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0003709 mltB CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000730 mltB_1 CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001081 mltB CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002519 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0240502 mltB CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0006823 mltB CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002589 mltB CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0006202 mltB CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0000551 mltB CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0125189 mltB CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007699 mltB CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0007160 mltB CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003833 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0008614 mltB CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031212 mltB CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007064 mltB CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0001719 mltB CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0002474 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005660 mltB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005316 mltB CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0002770 mltB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0003317 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0001717 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0008304 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0002166 mltB CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB20886mutantTn5 InsertionRequest the StrainABE-0008885mltBmltB::Tn5KAN-I-SceI at position 333 in Plus orientation ,+ pKD460Blattner Laboratory
FB20887mutantTn5 InsertionRequest the StrainABE-0008885mltBmltB::Tn5KAN-I-SceI at position 333 in Plus orientation ,- pKD465Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2819491 to 2830576
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0008869alaSCDScomplement28193812822011Downstream
ABE-0008872recXCDScomplement28221392822639Downstream
ABE-0008876recACDScomplement28227082823769Downstream
ABE-0008882pncCCDScomplement28238492824346Downstream
ABE-0008885mltBCDScomplement28244912825576Matches
ABE-0008890srlACDSforward28258322826395Upstream
ABE-0008892srlECDSforward28263922827351Upstream
ABE-0008894srlBCDSforward28273622827733Upstream
ABE-0008896srlDCDSforward28277372828516Upstream
ABE-0285538repeat_regionforward28285612828589Upstream
ABE-0008898gutMCDSforward28286212828980Upstream
ABE-0008900srlRCDSforward28290472829820Upstream
ABE-0008902gutQCDSforward28298132830778Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.