Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0008890 (srlA) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0008890 showshow history
Names
srlA JW5429 ECK2697 sbl gutA b2702
Product
PTS system glucitol/sorbitol-specific IIC component
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 2825832 2826395 564 188
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR004699 (IPR004699 Phosphotransferase system, enzyme II sorbitol-specific factor) Apr 2008
Automated Process Approved PF03608 (PF03608 PTS system enzyme II sorbitol-specific factor) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004699
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004699
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name srlA Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym sbl Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved synonym JW5429 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK2697 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym gutA Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved locus tag b2702 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product PTS system glucitol/sorbitol-specific IIC component Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Oct 2021
Person Approved alternate product name PTS system, glucitol/sorbitol-specific IIC component, one of two Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Uncurated alternate product name PTS family enzyme IIC, glucitol/sorbitol-specific Published Annotation - Database Name: GenProtEC Jan 2006
Protein Family
Automated Process Approved protein family IPR004699 Phosphotransferase system, enzyme II sorbitol-specific factor Protein Sequence Similarity - InterPro Domain: IPR004699
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF03608 PTS system enzyme II sorbitol-specific factor Protein Sequence Similarity - PFAM Model Name: PF03608
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Uncurated EC number 2.7.1.69 Protein Sequence Similarity - InterPro Domain: IPR004699
Reference: Escherichia coli K-12 MG1655 		Dec 2008
Person Uncurated MultiFun 4.4.A.4 (transport; Group Translocators; Phosphotransferase Systems (PEP-dependent PTS); The PTS Glucitol (Gut) Family) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.S.68 (transport; substrate; glucitol/sorbitol) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.1.1 (metabolism; carbon utilization; carbon compounds) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:48994904 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:947575 Published Annotation - Entrez Gene Database ID: 947575
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref UniProtKB/Swiss-Prot:P56579 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0008890 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10969 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P56579 Published Annotation - Swiss-Prot Accession Number: P56579 Jan 2005
Person Approved function transport; Transport of small molecules: Carbohydrates, organic acids, alcohols Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note PTS system, glucitol/sorbitol-specific IIC component, one of two; GO_process: GO:0016052 - carbohydrate catabolic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAT48148.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved sequence correction version m56: K21 to E Experimental - GenBank Accession Number: AG613243
Reference: Escherichia coli 		May 2004
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Uncurated GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004699
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004699
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0004847 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0003105 srlA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0003086 srlA CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0003455 srlA CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0002949 srlA CDS
Ortholog
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0003894 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0003525 srlA_2 CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0004253 srlA CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0004964 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0297626 srlA CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0003291 srlA CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008286 srlA CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0002691 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008462 srlA CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0002696 srlA CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0001593 CDS
Person Approved Go view Escherichia coli ATCC 8739 AEM-0006520 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007401 srlA CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007351 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0079412 srlA CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0003084 srlA CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0003592 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0008182 srlA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008803 srlA CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0007423 srlA CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001265 CDS
Person Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0010926 srlA pseudogene
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0285375 srlA pseudogene
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0006345 srlA CDS
Automated Process Approved Go view Escherichia coli HS ADR-0007513 srlA CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0003219 CDS
Person Approved Go view Escherichia coli K-12 DH10B AEC-0002531 srlA CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0002771 srlA CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0003266 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0003182 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0003158 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0003016 srlA CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0177263 srlA CDS
Person Approved Go view Escherichia coli SE11 AFS-0003007 CDS
Person Approved Go view Escherichia coli SMS-3-5 AFT-0002823 srlA CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0133593 srlA pseudogene
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0000847 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0003073 srlA CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0003046 srlA CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0004061 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0000879 srlA CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0003434 CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0007797 srlA3 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0007119 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000143 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0003238 srlA CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007397 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0008732 srlA CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0008284 srlA CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006571 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0007378 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008825 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0005376 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005393 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006501 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0007393 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005666 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0002718 CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0002689 srlA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0003537 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007557 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005667 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007055 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0005264 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0111339 srlA CDS
Person Uncurated Go view Salmonella Typhi Ty2 ABS-0084450 srlA CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0003427 srlA CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0098873 srlA CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006467 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0006812 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008209 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0002128 CDS
Person Approved Go view Shigella boydii 227 ADV-0003096 srlA CDS
Person Approved Go view Shigella boydii BS512 ADJ-0008587 srlA CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005559 srlA CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0003316 srlA CDS
Person Uncurated Go view Shigella flexneri 2457T ABQ-0074080 srlA pseudogene
Person Approved Go view Shigella flexneri 301 ABT-0088979 srlA pseudogene
Automated Process Approved Go view Shigella flexneri 8401 BAG-0002994 srlA CDS
Person Approved Go view Shigella sonnei 046 ADD-0003115 srlA CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000771 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0003278 gutA CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001515 gutA CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002540 gutA CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002780 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2820832 to 2831395
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0008869alaSCDScomplement28193812822011Upstream
ABE-0008872recXCDScomplement28221392822639Upstream
ABE-0008876recACDScomplement28227082823769Upstream
ABE-0008882pncCCDScomplement28238492824346Upstream
ABE-0008885mltBCDScomplement28244912825576Upstream
ABE-0008890srlACDSforward28258322826395Matches
ABE-0008892srlECDSforward28263922827351Overlaps Downstream
ABE-0008894srlBCDSforward28273622827733Downstream
ABE-0008896srlDCDSforward28277372828516Downstream
ABE-0285538repeat_regionforward28285612828589Downstream
ABE-0008898gutMCDSforward28286212828980Downstream
ABE-0008900srlRCDSforward28290472829820Downstream
ABE-0008902gutQCDSforward28298132830778Downstream
ABE-0008904norRCDScomplement28307752832289Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.