Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0008894 (srlB) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0008894 showshow history
Names
srlB JW2673 ECK2699 sbl gutB b2704
Product
PTS system glucitol/sorbitol-specific IIA component
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 2827362 2827733 372 124
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR004716 (IPR004716 Phosphotransferase system, glucitol/sorbitol-specific IIA component) Apr 2008
Automated Process Approved IPR018454 (IPR018454 Phosphotransferase system, glucitol/sorbitol-specific IIA component, subgroup) Jul 2018
Automated Process Approved IPR036665 (IPR036665 Phosphotransferase system, glucitol/sorbitol-specific IIA component superfamily) Jul 2018
Automated Process Approved PF03829 (PF03829 PTS system glucitol/sorbitol-specific IIA component) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR004716, IPR018454, IPR036665
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004716
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Uncurated GO molecular function GO:0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR004716, IPR018454, IPR036665
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name srlB Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym sbl Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved synonym JW2673 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK2699 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym gutB Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved locus tag b2704 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product PTS system glucitol/sorbitol-specific IIA component Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Oct 2021
Person Uncurated alternate product name PTS family enzyme IIA, glucitol/sorbitol-specific Published Annotation - Database Name: GenProtEC Jan 2006
Person Approved alternate product name PTS system, glucitol/sorbitol-specific enzyme IIA component Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Automated Process Approved protein family IPR036665 Phosphotransferase system, glucitol/sorbitol-specific IIA component superfamily Protein Sequence Similarity - InterPro Domain: IPR036665
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR018454 Phosphotransferase system, glucitol/sorbitol-specific IIA component, subgroup Protein Sequence Similarity - InterPro Domain: IPR018454
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR004716 Phosphotransferase system, glucitol/sorbitol-specific IIA component Protein Sequence Similarity - InterPro Domain: IPR004716
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF03829 PTS system glucitol/sorbitol-specific IIA component Protein Sequence Similarity - PFAM Model Name: PF03829
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Approved EC number 2.7.1.- Published Annotation - Swiss-Prot Accession Number: P05706 Feb 2006
Person Uncurated MultiFun 4.S.68 (transport; substrate; glucitol/sorbitol) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.4.A.4 (transport; Group Translocators; Phosphotransferase Systems (PEP-dependent PTS); The PTS Glucitol (Gut) Family) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.1.1 (metabolism; carbon utilization; carbon compounds) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1789056 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P05706 Published Annotation - Swiss-Prot Accession Number: P05706 Jan 2005
Automated Process Approved db xref UniProtKB/Swiss-Prot:P05706 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0008894 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:948971 Published Annotation - Entrez Gene Database ID: 948971
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref EcoGene:EG10970 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Transport of small molecules: Carbohydrates, organic acids, alcohols Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note PTS system, glucitol/sorbitol-specific enzyme IIA component; GO_process: GO:0016052 - carbohydrate catabolic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC75746.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 8.96
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Uncurated GO biological process GO:0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR004716, IPR018454, IPR036665
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004716
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Uncurated GO molecular function GO:0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR004716, IPR018454, IPR036665
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0003598 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002684 srlB CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002849 srlB CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0003479 srlB CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0002826 srlB CDS
Ortholog
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0003527 CDS
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0004255 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0004962 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0297634 srlB CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008284 srlB CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0002693 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008460 srlB CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0002698 srlB CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0001591 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0006518 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007403 srlB CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007353 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0079414 srlB CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0003086 CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0003594 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0008180 srlB CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008805 srlB CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0007425 srlB CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001269 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007293 srlB CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005813 srlB CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005289 srlB CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0008085 srlB CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0008790 srlB CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007409 srlB CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006584 srlB CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007408 srlB CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0008226 srlB CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0008483 srlB CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007933 srlB CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008261 srlB CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0027682 srlB CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0006347 srlB CDS
Automated Process Approved Go view Escherichia coli HS ADR-0007515 srlB CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0003217 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0002533 srlB CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0002773 srlB CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0003268 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0003184 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0003156 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0003018 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0177265 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0003009 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0002825 srlB CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0133596 srlB CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0000851 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0003075 srlB CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0003048 srlB CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0006926 CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0001317 CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0005341 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0007121 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000141 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0003240 slrB CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007399 srlB CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0008741 slrB CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0008292 slrB CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006569 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0007380 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008823 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0005378 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005395 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006503 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0007395 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005664 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0002720 CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0002691 srlB CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0003539 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007559 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005665 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007057 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0005266 CDS
Person Uncurated Go view Salmonella Typhi CT18 ABX-0111344 srlB CDS
Person Uncurated Go view Salmonella Typhi Ty2 ABS-0084452 srlB CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0003429 slrB CDS
Person Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0098879 slrB CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006465 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0006810 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008211 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0002126 CDS
Person Approved Go view Shigella boydii 227 ADV-0003094 srlB CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0008585 srlB CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005557 srlB CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0003320 srlB CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0074082 srlB CDS
Person Approved Go view Shigella flexneri 301 ABT-0088980 srlB CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0002992 srlB CDS
Person Approved Go view Shigella sonnei 046 ADD-0003117 srlB CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000769 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0003272 gutB CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001517 gutB_2 CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002542 gutB CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002778 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2822362 to 2832733
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0008872recXCDScomplement28221392822639Upstream
ABE-0008876recACDScomplement28227082823769Upstream
ABE-0008882pncCCDScomplement28238492824346Upstream
ABE-0008885mltBCDScomplement28244912825576Upstream
ABE-0008890srlACDSforward28258322826395Upstream
ABE-0008892srlECDSforward28263922827351Upstream
ABE-0008894srlBCDSforward28273622827733Matches
ABE-0008896srlDCDSforward28277372828516Downstream
ABE-0285538repeat_regionforward28285612828589Downstream
ABE-0008898gutMCDSforward28286212828980Downstream
ABE-0008900srlRCDSforward28290472829820Downstream
ABE-0008902gutQCDSforward28298132830778Downstream
ABE-0008904norRCDScomplement28307752832289Downstream
ABE-0008910norVCDSforward28324762833915Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.