Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0008896 (srlD) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0008896 showshow history
Names
srlD JW2674 ECK2700 sbl gutD b2705
Product
sorbitol-6-phosphate dehydrogenase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 2827737 2828516 780 260
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR002198 (IPR002198 (DEPRECATED) Short-chain dehydrogenase/reductase SDR) Apr 2008
Automated Process Approved IPR002347 (IPR002347 Short-chain dehydrogenase/reductase SDR) Apr 2008
Automated Process Approved IPR036291 (IPR036291 NAD(P)-binding domain superfamily) Jul 2018
Automated Process Approved PF00106 (PF00106 short chain dehydrogenase) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002198
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002198
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name srlD Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym gutD Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved synonym JW2674 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym sbl Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved synonym ECK2700 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b2705 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product sorbitol-6-phosphate dehydrogenase Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name glucitol (sorbitol)-6-phosphate dehydrogenase Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Automated Process Approved protein family IPR002198 (DEPRECATED) Short-chain dehydrogenase/reductase SDR Protein Sequence Similarity - InterPro Domain: IPR002198
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR036291 NAD(P)-binding domain superfamily Protein Sequence Similarity - InterPro Domain: IPR036291
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR002347 Short-chain dehydrogenase/reductase SDR Protein Sequence Similarity - InterPro Domain: IPR002347
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF00106 short chain dehydrogenase Protein Sequence Similarity - PFAM Model Name: PF00106
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Approved EC number 1.1.1.140 Published Annotation - Swiss-Prot Accession Number: P05707 Feb 2006
Person Uncurated MultiFun 1.1.1 (metabolism; carbon utilization; carbon compounds) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10971 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1789057 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P05707 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P05707 Published Annotation - Swiss-Prot Accession Number: P05707 Jan 2005
Automated Process Approved db xref ASAP:ABE-0008896 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:948937 Published Annotation - Entrez Gene Database ID: 948937
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved function enzyme; Degradation of small molecules: Carbon compounds Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note glucitol (sorbitol)-6-phosphate dehydrogenase; GO_process: GO:0016052 - carbohydrate catabolic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC75747.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 9.26
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002198
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002198
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0004845 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002796 srlD CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002935 srlD CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0003454 srlD CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0002885 srlD CDS
Ortholog
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0003891 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0003528 srlD CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0004256 srlD CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0004961 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0297637 srlD CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0003288 srlD CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008283 srlD CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0002694 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008459 srlD CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0002699 srlD CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0001590 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0006517 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007404 srlD CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007354 srlD pseudogene
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0079415 srlD CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0003087 srlD CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0003595 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0008179 srlD CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008806 srlD CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0007426 srlD CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001270 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007294 srlD CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005814 srlD CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005290 srlD CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0008084 srlD CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0008791 srlD CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007408 srlD CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006585 srlD CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007409 srlD CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0008227 srlD CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0008482 srlD CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007932 srlD CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008262 srlD CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0027683 srlD CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0006348 srlD CDS
Automated Process Approved Go view Escherichia coli HS ADR-0007516 srlD CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0003216 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0002534 srlD CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0002774 srlD CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0003269 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0003185 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0003155 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0003019 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0003010 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0002826 srlD CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0133597 srlD CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0000852 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0003076 srlD CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0003049 srlD CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0004064 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0000876 srlD CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0003437 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0007122 srlD CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000140 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0003241 srlD CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007400 srlD CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0008743 srlD CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0008294 srlD CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006568 srlD CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0007381 srlD CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0005379 srlD CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005396 srlD CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006504 srlD CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0007396 srlD CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005663 srlD CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0002721 CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0002692 srlD CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0003540 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007560 srlD CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005664 srlD CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007058 srlD CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0005267 srlD CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0111346 srlD CDS
Person Uncurated Go view Salmonella Typhi Ty2 ABS-0084453 srlD CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0003430 srlD CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0098882 srlD CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006464 srlD CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0006809 srlD CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008212 srlD CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0002125 CDS
Person Approved Go view Shigella boydii 227 ADV-0003093 srlD CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0008584 srlD CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005556 srlD CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0003321 srlD CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0074083 srlD CDS
Person Approved Go view Shigella flexneri 301 ABT-0088981 srlD CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0002991 srlD CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000768 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0003269 gutD CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001518 gutD CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002543 gutD CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002777 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2822737 to 2833516
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0008876recACDScomplement28227082823769Upstream
ABE-0008882pncCCDScomplement28238492824346Upstream
ABE-0008885mltBCDScomplement28244912825576Upstream
ABE-0008890srlACDSforward28258322826395Upstream
ABE-0008892srlECDSforward28263922827351Upstream
ABE-0008894srlBCDSforward28273622827733Upstream
ABE-0008896srlDCDSforward28277372828516Matches
ABE-0285538repeat_regionforward28285612828589Downstream
ABE-0008898gutMCDSforward28286212828980Downstream
ABE-0008900srlRCDSforward28290472829820Downstream
ABE-0008902gutQCDSforward28298132830778Downstream
ABE-0008904norRCDScomplement28307752832289Downstream
ABE-0008910norVCDSforward28324762833915Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.