Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0008928 (ascB) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0008928 showshow history
Names
ascB JW2686 ECK2711 sac b2716
Product
cryptic 6-phospho-beta-glucosidase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 2840990 2842414 1425 475
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR001360 (IPR001360 Glycoside hydrolase family 1) Apr 2008
Automated Process Approved IPR013781 (IPR013781 (DEPRECATED) Glycoside hydrolase, catalytic domain) Apr 2008
Automated Process Approved IPR017853 (IPR017853 Glycoside hydrolase superfamily) Jul 2018
Automated Process Approved PF00232 (PF00232 Glycosyl hydrolase family 1) Jul 2018
Automated Process Uncurated GH1 (GH1 Glycoside Hydrolase Family 1) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0005975 carbohydrate metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001360
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0043169 cation binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013781
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013781
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001360
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name ascB Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym sac Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved synonym JW2686 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK2711 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b2716 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product cryptic 6-phospho-beta-glucosidase Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name 6-phospho-beta-glucosidase; cryptic Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Automated Process Approved protein family IPR001360 Glycoside hydrolase family 1 Protein Sequence Similarity - InterPro Domain: IPR001360
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated protein family GH1 Glycoside Hydrolase Family 1 Protein Sequence Similarity - CAZy Model Name: GH1
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR013781 (DEPRECATED) Glycoside hydrolase, catalytic domain Protein Sequence Similarity - InterPro Domain: IPR013781
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF00232 Glycosyl hydrolase family 1 Protein Sequence Similarity - PFAM Model Name: PF00232
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR017853 Glycoside hydrolase superfamily Protein Sequence Similarity - InterPro Domain: IPR017853
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Automated Process Uncurated EC number 3.2.1.- Published Annotation - Database Name: EC2GO: GO:0004553
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Approved EC number 3.2.1.86 Published Annotation - Swiss-Prot Accession Number: P24240 Feb 2006
Person Uncurated MultiFun 1.1.1 (metabolism; carbon utilization; carbon compounds) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 10 (cryptic genes) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0008928 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1789070 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10085 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:947460 Published Annotation - Entrez Gene Database ID: 947460
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref UniProtKB/Swiss-Prot:P24240 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P24240 Published Annotation - Swiss-Prot Accession Number: P24240 Jan 2005
Person Approved function enzyme; Degradation of small molecules: Carbon compounds Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note 6-phospho-beta-glucosidase; cryptic; GO_process: GO:0016052 - carbohydrate catabolic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC75758.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 9.26
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0005975 carbohydrate metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001360
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013781
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0043169 cation binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013781
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001360
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0003454 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0003318 ascB CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002882 ascB CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000015 ascB CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000059 ascB CDS
Ortholog
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0003778 CDS
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0003539 bglH_1 CDS
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0004267 bglH CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0004948 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008271 ascB CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0002706 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008447 CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0002714 ascB CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0001579 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0006505 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007417 ascB CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007020 CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0003099 CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0003608 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0008166 ascB CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008818 ascB CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0007438 ascB CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001283 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007306 ascB CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005827 ascB CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005302 ascB CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0008071 ascB CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0008803 ascB CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007395 ascB CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006597 ascB CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007421 ascB CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0008239 ascB CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0008470 ascB CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007919 ascB CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008274 ascB CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0027694 ascB CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0006359 bglH_1 CDS
Automated Process Approved Go view Escherichia coli HS ADR-0007527 ascB CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0002545 ascB CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0002785 ascB CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0003280 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0003196 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0003144 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0177278 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0003021 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0002838 ascB CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0133608 ascB CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0000864 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0003087 ascB CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0001911 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0003061 ascB CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0001429 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0006533 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0004060 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0000866 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0003955 ascB CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0004698 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0004339 ascB CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0004327 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0007757 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0002223 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0286582 ascB CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0008361 ascB CDS
Person Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0062428 ascB CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001243 ascB CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0002748 CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0003706 ascB CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0007048 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0000435 CDS
Person Approved Go view Shigella boydii 227 ADV-0003082 ascB CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0008572 ascB CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0003331 ascB CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0002980 ascB CDS
Person Approved Go view Shigella sonnei 046 ADD-0003129 ascB CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001777 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0003753 ascB CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000711 ascB_2 CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001064 ascB_2 CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001084 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0008252 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0002181 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2835990 to 2847414
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0008915hypFCDScomplement28351732837425Upstream
ABE-0285540repeat_regionforward28374652837491Upstream
ABE-0008919hydNCDScomplement28375782838105Upstream
ABE-0008922ascGCDScomplement28382542839264Upstream
ABE-0008926ascFCDSforward28395242840981Upstream
ABE-0008928ascBCDSforward28409902842414Matches
ABE-0285541repeat_regionforward28424232842501Downstream
ABE-0008931hycICDScomplement28425732843043Downstream
ABE-0008933hycHCDScomplement28430362843446Downstream
ABE-0008936hycGCDScomplement28434432844210Downstream
ABE-0008942hycFCDScomplement28442102844752Downstream
ABE-0008944hycECDScomplement28447622846471Downstream
ABE-0008946hycDCDScomplement28464892847412Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.