Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0008944 (hycE) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0008944 showshow history
Names
hycE hevE JW2691 ECK2716 b2721
Product
formate hydrogenlyase subunit
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 2844762 2846471 1710 570
Sequence

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View sequence with flanking regions: bases upstream and bases downstream

Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR001268 (IPR001268 NADH:ubiquinone oxidoreductase, 30kDa subunit) Apr 2008
Automated Process Approved IPR014364 (IPR014364 (DEPRECATED) [NiFe]-hydrogenase-3-type complex, fused large subunit/NADH:quinone oxidoreductase, subunit NuoCD) Apr 2008
Automated Process Approved IPR014656 (IPR014656 (DEPRECATED) [NiFe]-hydrogenase-3-type complex, fused large subunit) Apr 2008
Automated Process Approved IPR014029 (IPR014029 NADH:ubiquinone oxidoreductase, 49kDa subunit, conserved site) Apr 2008
Automated Process Approved IPR001501 (IPR001501 Nickel-dependent hydrogenase, large subunit) Apr 2008
Automated Process Approved IPR001135 (IPR001135 NADH-quinone oxidoreductase, subunit D) Apr 2008
Automated Process Approved IPR037232 (IPR037232 NADH:ubiquinone oxidoreductase, 30kDa subunit superfamily) Jul 2018
Automated Process Approved IPR029014 (IPR029014 [NiFe]-hydrogenase, large subunit) Jul 2018
Automated Process Approved PF00329 (PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit) Jul 2018
Automated Process Approved PF00374 (PF00374 Nickel-dependent hydrogenase) Jul 2018
Automated Process Approved PF00346 (PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0006113 fermentation Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR001268, IPR001135
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0006118 (OBSOLETE) electron transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR014364
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0009061 anaerobic respiration Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Uncurated GO cellular component GO:0030288 outer membrane-bounded periplasmic space GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0051287 NAD binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001135
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0008137 NADH dehydrogenase (ubiquinone) activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR001268
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO molecular function GO:0048038 quinone binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR001135
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0016651 oxidoreductase activity, acting on NAD(P)H GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001135
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR014656
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0051539 4 iron, 4 sulfur cluster binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR014656
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0008901 ferredoxin hydrogenase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001501
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016151 nickel cation binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001501
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0009055 electron transfer activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001135
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name hycE Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym JW2691 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK2716 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym hevE Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved locus tag b2721 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product formate hydrogenlyase subunit Published Annotation - EcoCyc Accession Number: EG10478
Reference: Escherichia coli K-12 MG1655 		Oct 2021
Person Approved alternate product name hydrogenase 3, large subunit Published Annotation - PubMed ID: 16397293 Jan 2006
Person Uncurated alternate product name hydrogenase 3, large subunit (part of FHL complex) Published Annotation - Database Name: GenProtEC Jan 2006
Person Approved alternate product name large subunit of hydrogenase 3 (part of FHL complex) Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Automated Process Approved protein family IPR014364 (DEPRECATED) [NiFe]-hydrogenase-3-type complex, fused large subunit/NADH:quinone oxidoreductase, subunit NuoCD Protein Sequence Similarity - InterPro Domain: IPR014364
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR001268 NADH:ubiquinone oxidoreductase, 30kDa subunit Protein Sequence Similarity - InterPro Domain: IPR001268
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit Protein Sequence Similarity - PFAM Model Name: PF00329
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF00374 Nickel-dependent hydrogenase Protein Sequence Similarity - PFAM Model Name: PF00374
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit Protein Sequence Similarity - PFAM Model Name: PF00346
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR029014 [NiFe]-hydrogenase, large subunit Protein Sequence Similarity - InterPro Domain: IPR029014
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR037232 NADH:ubiquinone oxidoreductase, 30kDa subunit superfamily Protein Sequence Similarity - InterPro Domain: IPR037232
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR014656 (DEPRECATED) [NiFe]-hydrogenase-3-type complex, fused large subunit Protein Sequence Similarity - InterPro Domain: IPR014656
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR001501 Nickel-dependent hydrogenase, large subunit Protein Sequence Similarity - InterPro Domain: IPR001501
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR014029 NADH:ubiquinone oxidoreductase, 49kDa subunit, conserved site Protein Sequence Similarity - InterPro Domain: IPR014029
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR001135 NADH-quinone oxidoreductase, subunit D Protein Sequence Similarity - InterPro Domain: IPR001135
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Automated Process Approved EC number 1.12.7.2 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated EC number 7.1.1.2 Published Annotation - Database Name: EC2GO: GO:0008137
Reference: Escherichia coli K-12 MG1655 		Dec 2019
Person Uncurated EC number 1.12.-.- Protein Sequence Similarity - InterPro Domain: IPR001501
Reference: Escherichia coli K-12 MG1655 		Dec 2008
Person Approved EC number 1.6.-.- Protein Sequence Similarity - InterPro Domain: IPR014029
Reference: Escherichia coli K-12 MG1655 		Dec 2008
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.3 (location of gene products; inner membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.3.5 (metabolism; energy metabolism, carbon; fermentation) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.3.7 (metabolism; energy metabolism, carbon; anaerobic respiration) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P16431 Published Annotation - Swiss-Prot Accession Number: P16431 Jan 2005
Automated Process Approved db xref GI:1789076 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P16431 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0008944 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10478 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:947396 Published Annotation - Entrez Gene Database ID: 947396
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved function enzyme; Energy metabolism, carbon: Fermentation Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note large subunit of hydrogenase 3 (part of FHL complex); GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane; GO_process: GO:0006113 - fermentation; GO_process: GO:0009061 - anaerobic respiration Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC75763.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 5.41
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Uncurated subcellular localization Periplasmic Predicted by PSORTb - PSORTb Final_Score: 4.48
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Uncurated GO biological process GO:0006113 fermentation Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006118 (OBSOLETE) electron transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR014364
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR001268, IPR001135
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO biological process GO:0009061 anaerobic respiration Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Uncurated GO cellular component GO:0030288 outer membrane-bounded periplasmic space GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR014656
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0008901 ferredoxin hydrogenase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001501
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0008137 NADH dehydrogenase (ubiquinone) activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR001268
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO molecular function GO:0048038 quinone binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR001135
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0051287 NAD binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001135
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016651 oxidoreductase activity, acting on NAD(P)H GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001135
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016151 nickel cation binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001501
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0009055 electron transfer activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001135
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0051539 4 iron, 4 sulfur cluster binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR014656
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0002548 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000242 hyfG CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001564 hyfG CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0004151 hyfG CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000065 hyfG CDS
Ortholog
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0003545 hycE CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0004273 hycE CDS
Person Uncurated Go view Enterobacter sp. 638 AEL-0003893 hycE CDS
Person Approved Go view Escherichia coli 536 (UPEC) AEF-0002713 hycE CDS
Person Approved Go view Escherichia coli APEC O1 (APEC) AEG-0002720 hycE CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0001572 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0006500 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0079437 hycE CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0003108 CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0003616 CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0003179 hycE CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0007446 hycE CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0008808 hycE CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0027699 hycE CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0006366 hycE CDS
Automated Process Approved Go view Escherichia coli HS ADR-0007532 hycE CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0003199 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0002550 hycE CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0002790 hycE CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0003572 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0003204 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0003139 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0003037 hycE CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0003026 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0002844 hycE CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0133613 hycE CDS
Person Approved Go view Escherichia coli UTI89 (UPEC) AEA-0003093 hycE CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0003259 hycE CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0002706 hycE CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0111401 hycE CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0084468 hycE CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0098922 hycE CDS
Person Uncurated Go view Serratia proteamaculans 568 AEN-0008963 hycE CDS
Person Approved Go view Shigella boydii 227 ADV-0003077 hycE CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0008567 hycE CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0003337 hycE CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0074096 hycE CDS
Person Approved Go view Shigella flexneri 301 ABT-0088991 hycE CDS
Person Approved Go view Shigella flexneri 8401 BAG-0002973 hycE CDS
Person Approved Go view Shigella sonnei 046 ADD-0003137 hycE CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB20903mutantTn5 InsertionRequest the StrainABE-0008944hycEhycE::Tn5KAN-I-SceI at position 790 in Minus orientation ,- pKD465Blattner Laboratory
FB20904mutantTn5 InsertionRequest the StrainABE-0008944hycEhycE::Tn5KAN-I-SceI at position 790 in Minus orientation ,+ pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2839762 to 2851471
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0008926ascFCDSforward28395242840981Downstream
ABE-0008928ascBCDSforward28409902842414Downstream
ABE-0285541repeat_regionforward28424232842501Downstream
ABE-0008931hycICDScomplement28425732843043Downstream
ABE-0008933hycHCDScomplement28430362843446Downstream
ABE-0008936hycGCDScomplement28434432844210Downstream
ABE-0008942hycFCDScomplement28442102844752Downstream
ABE-0008944hycECDScomplement28447622846471Matches
ABE-0008946hycDCDScomplement28464892847412Upstream
ABE-0008948hycCCDScomplement28474152849241Upstream
ABE-0008950hycBCDScomplement28492382849849Upstream
ABE-0008952hycACDScomplement28499742850435Upstream
ABE-0008958hypACDSforward28506472850997Upstream
ABE-0008960hypBCDSforward28510012851873Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.