Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0009008 (umpG) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0009008 showshow history
Names
umpG JW2714 ECK2739 ygbC surE b2744
Product
broad specificity 5'(3')-nucleotidase and polyphosphatase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 2869513 2870274 762 254
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR002828 (IPR002828 Survival protein SurE-like phosphatase/nucleotidase) Apr 2008
Automated Process Approved PF01975 (PF01975 Survival protein SurE) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0006950 response to stress Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0016787 hydrolase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR002828
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name umpG Published Annotation - PubMed ID: 23903661
Reference: Escherichia coli K-12 		Jun 2020
Person Approved synonym ECK2739 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ygbC Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved synonym JW2714 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym surE Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved locus tag b2744 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product broad specificity 5'(3')-nucleotidase and polyphosphatase Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name survival protein Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Uncurated alternate product name survival protein, protein damage control Published Annotation - Database Name: GenProtEC Jan 2006
Protein Family
Automated Process Approved protein family IPR002828 Survival protein SurE-like phosphatase/nucleotidase Protein Sequence Similarity - InterPro Domain: IPR002828
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF01975 Survival protein SurE Protein Sequence Similarity - PFAM Model Name: PF01975
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Approved EC number 3.6.1.11 Published Annotation - Swiss-Prot Accession Number: P0A840 Feb 2006
Automated Process Uncurated EC number 3.-.-.- Published Annotation - Database Name: EC2GO: GO:0016787
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Approved EC number 3.1.3.6 Published Annotation - Swiss-Prot Accession Number: P0A840 Feb 2006
Person Approved EC number 3.1.3.5 Published Annotation - Swiss-Prot Accession Number: P0A840 Feb 2006
Person Uncurated MultiFun 5.6 (cell processes; protection) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1789101 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:947211 Published Annotation - Entrez Gene Database ID: 947211
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0A840 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG11817 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0009008 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P0A840 Published Annotation - Swiss-Prot Accession Number: P0A840 Jan 2006
Person Approved function phenotype; Not classified Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note survival protein; GO_process: GO:0006950 - response to stress Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC75786.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Unknown Predicted by PSORTb - PSORTb Final_Score: 2.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Uncurated GO biological process GO:0006950 response to stress Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0016787 hydrolase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR002828
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0005427 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001650 surE CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001706 surE CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000997 surE CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001777 umpG CDS
Ortholog
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0003429 surE CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0000488 surE CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0003569 surE CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0004314 surE CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0004909 surE CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0304589 surE CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0000883 surE CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002793 surE CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0002800 surE CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008242 surE CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0002755 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008418 surE CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0002746 surE CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0001543 surE CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0006473 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007454 surE CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006985 SurE CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0079467 umpG CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0003132 surE CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0003644 surE CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0008131 surE CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008854 surE CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0003207 surE CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0007481 surE CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000158 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007334 surE CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005855 surE CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005330 surE CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0008043 surE CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0008831 surE CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007366 surE CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006626 surE CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007449 surE CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0008267 surE CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0008440 surE CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007890 surE CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008302 surE CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0027723 surE CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0006182 surE CDS
Automated Process Approved Go view Escherichia coli HS ADR-0007557 surE CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0003166 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0002572 surE CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0002813 surE CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0003544 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0003227 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0003116 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0003065 surE CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0177313 surE CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0003053 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0002867 surE CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0133634 surE CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0000890 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0003124 surE CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0000376 surE CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0001515 surE CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0003115 surE CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0001441 surE CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0002348 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0002570 surE CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0002371 surE CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0001634 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0003136 surE CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0001018 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0010813 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0000803 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0291064 surE CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0006199 surE CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0138404 surE CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0001592 surE CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0007219 surE CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000031 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0003345 surE CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007493 surE CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0009028 surE CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0008568 surE CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006472 surE CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0007476 surE CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006436 surE CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0005471 surE CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005493 surE CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006601 surE CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0007492 surE CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005567 surE CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0002811 CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0002782 surE CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0003656 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007654 surE CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005567 surE CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007150 surE CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0005359 surE CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0111575 surE CDS
Person Uncurated Go view Salmonella Typhi Ty2 ABS-0084545 surE CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0003535 surE CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0099142 surE CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006366 surE CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0006712 surE CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0007332 surE CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0000222 surE CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0267071 surE CDS
Person Approved Go view Shigella boydii 227 ADV-0003056 surE CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0008542 surE CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003834 surE CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0003364 surE CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0074129 surE CDS
Person Approved Go view Shigella flexneri 301 ABT-0089018 surE CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0002942 surE CDS
Person Approved Go view Shigella sonnei 046 ADD-0003162 surE CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0000580 VC0531 CDS
Person Uncurated Go view Wigglesworthia morsitans AEQ-0000475 surE CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0006882 surE CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0003182 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0002385 surE CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000102 surE CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000496 surE CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000921 CDS
Person Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0234946 surE CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005067 surE CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0003342 surE CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007149 surE CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003997 surE CDS
Person Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0126638 surE CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006448 surE CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0005939 surE CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0002007 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005921 surE CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004274 surE CDS
Person Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030468 surE CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007383 surE CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000896 surE CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003593 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0004773 surE CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007311 surE CDS
Person Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0000815 surE CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000950 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004070 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0008112 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0002225 surE CDS
Molecular Interactions to toptop
Author Approval Feature Name Technique Evidence Comment Annotated
Person Approved ABE-0009008 umpG lambda repressor assay Doodle - bnumber: b2744 Oct 2003
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2864513 to 2875274
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0008996ygbMCDSforward28642362865012Downstream
ABE-0008999ygbNCDSforward28651012866465Downstream
ABE-0285543repeat_regionforward28664792866496Downstream
ABE-0009001rpoSCDScomplement28665592867551Downstream
ABE-0009004nlpDCDScomplement28676142868753Downstream
ABE-0009006pcmCDScomplement28688932869519Overlaps Downstream
ABE-0009008umpGCDScomplement28695132870274Matches
ABE-0009011truDCDScomplement28702552871304Overlaps Upstream
ABE-0009013ispFCDScomplement28713012871780Upstream
ABE-0009017ispDCDScomplement28717802872490Upstream
ABE-0009019ftsBCDScomplement28725092872820Upstream
ABE-0009021ygbECDScomplement28730142873337Upstream
ABE-0009023cysCCDScomplement28733872873992Upstream
ABE-0009026cysNCDScomplement28739922875419Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.