Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0009017 (ispD) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0009017 showshow history
Names
ispD JW2717 ECK2742 ygbP b2747
Product
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 2871780 2872490 711 237
Sequence

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0001004
EnteroFam0009017: Trusted threshold=551; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR008233 (IPR008233 (DEPRECATED) 4-diphosphocytidyl-2-methyl-D-erythritol synthase) Apr 2008
Automated Process Approved IPR001228 (IPR001228 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase) Apr 2008
Automated Process Approved IPR034683 (IPR034683 Cytidylyltransferase IspD/TarI) Jul 2018
Automated Process Approved IPR029044 (IPR029044 Nucleotide-diphospho-sugar transferases) Jul 2018
Automated Process Approved PF01128 (PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0008299 isoprenoid biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008233
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0070567 cytidylyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR034683
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0050518 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008233
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name ispD Experimental - PubMed ID: 11752431
Reference: Escherichia coli 		Aug 2002
Person Approved synonym ECK2742 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW2717 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ygbP Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved locus tag b2747 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Experimental - PubMed ID: 11752431
Reference: Escherichia coli 		Jan 2006
Person Approved alternate product name 4-diphosphocytidyl-2C-methyl-D-erythritol synthase Published Annotation - PubMed ID: 16397293 Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0009017: Trusted threshold=551; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0001004
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR008233 (DEPRECATED) 4-diphosphocytidyl-2-methyl-D-erythritol synthase Protein Sequence Similarity - InterPro Domain: IPR008233
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Protein Sequence Similarity - PFAM Model Name: PF01128
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR034683 Cytidylyltransferase IspD/TarI Protein Sequence Similarity - InterPro Domain: IPR034683
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR029044 Nucleotide-diphospho-sugar transferases Protein Sequence Similarity - InterPro Domain: IPR029044
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR001228 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Protein Sequence Similarity - InterPro Domain: IPR001228
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Approved EC number 2.7.7.60 Published Annotation - Swiss-Prot Accession Number: Q46893 Feb 2006
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.5.3.11 (metabolism; building block biosynthesis; cofactor, small molecule carrier; menaquinone, ubiquinone) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0009017 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:948269 Published Annotation - Entrez Gene Database ID: 948269
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref EcoGene:EG13110 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:Q46893 Published Annotation - Swiss-Prot Accession Number: Q46893 Jan 2006
Automated Process Approved db xref GI:1789104 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved note GO_component: GO:0005737 - cytoplasm Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC75789.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 8.96
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0008299 isoprenoid biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008233
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0050518 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008233
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0070567 cytidylyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR034683
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0001004 ispD CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0002019 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000271 ispD CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000262 ispD CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000497 ispD CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000849 ispD CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0003302 CDS
Person Uncurated Go view Buchnera aphidicola APS ABZ-0129690 ygbP CDS
Person Uncurated Go view Buchnera aphidicola Sg [T] ABV-0104534 ygbP CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0003432 ispD CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0000485 ispD CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0003572 ispD CDS
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0004317 ispD CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0005370 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0020439 ispD CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0003391 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0004906 ispD CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0304595 ispD CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0000879 ispD CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002796 ispD CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0002797 ispD CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008239 ispD CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0002758 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008415 ispD CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0002749 ispD CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0001540 ispD CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0006470 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007457 ispD CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006982 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0079470 ispD CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0003135 ispD CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0003647 ispD CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0008128 ispD CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008857 ispD CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0003210 ispD CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0007484 ispD CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000161 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007337 ispD CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005858 ispD CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005333 ispD CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0008040 ispD CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0008834 ispD CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007363 ispD CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006629 ispD CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007452 ispD CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0008270 ispD CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0008437 ispD CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007887 ispD CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008305 ispD CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0027726 ispD CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0006179 ispD CDS
Automated Process Approved Go view Escherichia coli HS ADR-0007560 ispD CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0003163 ispD CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0002575 ispD CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0002816 ispD CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0003541 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0003230 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0003113 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0003068 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0177316 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0003056 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0002870 ispD CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0133637 ispD CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0000893 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0003127 ygbP CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0000373 ispD CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0001512 ispD CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0003118 ispD CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0001444 ispD CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0005365 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0002351 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0002573 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0002374 ispD CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0001631 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0003139 ispD CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0001015 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0010816 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0000806 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0291067 ispD CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0006203 ispD CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0063849 ispD CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002036 ispD CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0000908 ispD CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0003968 ispD CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0008510 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0138397 ispD CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0001586 ispD CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0007222 ispD CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000028 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0003348 ispD CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007496 ispD CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0009035 ispD CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0008575 ispD CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006469 ispD CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0007479 ispD CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006439 ispD CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0005474 ispD CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005496 ispD CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006604 ispD CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0007495 ispD CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005564 ispD CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0002814 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0002785 ispD CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0003659 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007657 ispD CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005564 ispD CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007153 ispD CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0005362 ispD CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0111581 ispD CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0084548 ispD CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0003538 ispD CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0099151 ispD CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006363 ispD CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0006709 ispD CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0007335 ispD CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0000219 ispD CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0267074 ispD CDS
Person Approved Go view Shigella boydii 227 ADV-0003053 ygbP CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0008539 ispD CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003831 ispD CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0003367 ygbP CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0074132 ispD CDS
Person Approved Go view Shigella flexneri 301 ABT-0089021 ygbP CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0002939 ygbP CDS
Person Approved Go view Shigella sonnei 046 ADD-0003165 ispD CDS
Person Uncurated Go view Trabulsiella guamensis ATCC 49490 [T] APH-0002693 ispD CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0000577 VC0528 CDS
Person Uncurated Go view Wigglesworthia morsitans AEQ-0000056 ispD CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0006888 ispD CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0003185 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0002377 b2747 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000105 ispD CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000493 ispD CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000918 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0234943 ispD CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005070 ispD CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0003339 ispD CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007152 ispD CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003994 ispD CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0126644 ispD CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006445 ispD CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0005936 ispD CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0002004 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005918 ispD CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004271 ispD CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030465 ispD CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007380 ispD CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000893 ispD CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003590 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0004770 ispD CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007314 ispD CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0000812 ispD CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000947 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004073 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0008097 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0002228 ispD CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2866780 to 2877490
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0009001rpoSCDScomplement28665592867551Downstream
ABE-0009004nlpDCDScomplement28676142868753Downstream
ABE-0009006pcmCDScomplement28688932869519Downstream
ABE-0009008umpGCDScomplement28695132870274Downstream
ABE-0009011truDCDScomplement28702552871304Downstream
ABE-0009013ispFCDScomplement28713012871780Overlaps Downstream
ABE-0009017ispDCDScomplement28717802872490Matches
ABE-0009019ftsBCDScomplement28725092872820Upstream
ABE-0009021ygbECDScomplement28730142873337Upstream
ABE-0009023cysCCDScomplement28733872873992Upstream
ABE-0009026cysNCDScomplement28739922875419Upstream
ABE-0009029cysDCDScomplement28754212876329Upstream
ABE-0009033iapCDSforward28765812877618Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.