Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0009026 (cysN) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0009026 showshow history
Names
cysN JW2721 ECK2746 b2751
Product
sulfate adenylyltransferase subunit 1
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 2873992 2875419 1428 476
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0001008
EnteroFam0009026: Trusted threshold=1300.4; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR009000 (IPR009000 Translation protein, beta-barrel domain superfamily) Apr 2008
Automated Process Approved IPR009001 (IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal) Apr 2008
Automated Process Approved IPR000795 (IPR000795 Translational (tr)-type GTP-binding domain) Apr 2008
Automated Process Approved IPR002035 (IPR002035 von Willebrand factor, type A) Apr 2008
Automated Process Approved IPR011779 (IPR011779 Sulphate adenylyltransferase, large subunit) Apr 2008
Automated Process Approved IPR004161 (IPR004161 Translation elongation factor EFTu-like, domain 2) Apr 2008
Automated Process Approved IPR005225 (IPR005225 Small GTP-binding protein domain) Jul 2018
Automated Process Approved IPR027417 (IPR027417 P-loop containing nucleoside triphosphate hydrolase) Jul 2018
Automated Process Approved PF00009 (PF00009 Elongation factor Tu GTP binding domain) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Approved GO biological process GO:0006790 sulfur compound metabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0016772 transferase activity, transferring phosphorus-containing groups GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011779
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003924 GTPase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000795
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005525 GTP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000795
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name cysN Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym JW2721 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK2746 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b2751 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product sulfate adenylyltransferase subunit 1 Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Oct 2021
Person Uncurated alternate product name ATP-sulfurylase, subunit 1 (ATP:sulfate adenylyltransferase) Published Annotation - Database Name: GenProtEC Jan 2006
Person Approved alternate product name ATP-sulfurylase (ATP:sulfate adenylyltransferase), subunit 1, probably a GTPase Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0009026: Trusted threshold=1300.4; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0001008
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal Protein Sequence Similarity - InterPro Domain: IPR009001
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR009000 Translation protein, beta-barrel domain superfamily Protein Sequence Similarity - InterPro Domain: IPR009000
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR000795 Translational (tr)-type GTP-binding domain Protein Sequence Similarity - InterPro Domain: IPR000795
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR002035 von Willebrand factor, type A Protein Sequence Similarity - InterPro Domain: IPR002035
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF00009 Elongation factor Tu GTP binding domain Protein Sequence Similarity - PFAM Model Name: PF00009
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR011779 Sulphate adenylyltransferase, large subunit Protein Sequence Similarity - InterPro Domain: IPR011779
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR027417 P-loop containing nucleoside triphosphate hydrolase Protein Sequence Similarity - InterPro Domain: IPR027417
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR005225 Small GTP-binding protein domain Protein Sequence Similarity - InterPro Domain: IPR005225
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR004161 Translation elongation factor EFTu-like, domain 2 Protein Sequence Similarity - InterPro Domain: IPR004161
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Approved EC number 2.7.7.4 Published Annotation - Swiss-Prot Accession Number: P23845 Feb 2006
Person Uncurated MultiFun 1.8.2 (metabolism; metabolism of other compounds; sulfur metabolism) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P23845 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:947219 Published Annotation - Entrez Gene Database ID: 947219
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P23845 Published Annotation - Swiss-Prot Accession Number: P23845 Jan 2005
Automated Process Approved db xref GI:1789108 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0009026 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10194 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Central intermediary metabolism: Sulfur metabolism Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note ATP-sulfurylase (ATP:sulfate adenylyltransferase), subunit 1, probably a GTPase; GO_process: GO:0006790 - sulfur metabolic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC75793.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 9.26
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Approved GO biological process GO:0006790 sulfur compound metabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0003924 GTPase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000795
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005525 GTP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000795
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016772 transferase activity, transferring phosphorus-containing groups GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011779
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0001008 cysN CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0002023 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000565 cysN CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000923 cysN CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000650 cysN CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001445 cysN CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0003296 CDS
Person Uncurated Go view Buchnera aphidicola APS ABZ-0129693 cysN CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0003436 cysN CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0000481 cysN CDS
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0003576 cysN CDS
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0004321 cysN CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0005366 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0020435 cysN CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0003395 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0004901 cysN CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0304605 cysN CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0000874 cysN CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002800 cysN CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0002793 cysN CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008235 cysN CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0002762 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008411 CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0002753 cysN CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0001536 cysN CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0006466 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007461 cysN CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006978 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0079474 cysN CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0003139 cysN CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0003651 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0008124 cysN CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008862 cysN CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0003214 cysN CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0007488 cysN CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000165 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007342 cysN CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005862 cysN CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005338 cysN CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0008036 cysN CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0008839 cysN CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007359 cysN CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006633 cysN CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007456 cysN CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0008275 cysN CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0008433 cysN CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007883 cysN CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008310 cysN CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0027730 cysN CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0006174 cysN CDS
Automated Process Approved Go view Escherichia coli HS ADR-0007564 cysN CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0003159 cysN CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0002579 cysN CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0002820 cysN CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0003537 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0003234 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0003109 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0003072 cysN CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0003060 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0002875 cysN CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0133641 cysN CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0000897 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0003131 cysN CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0000369 cysN CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0004167 cysN CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0003122 cysN CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0001448 cysN CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0005361 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0002355 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0002577 cysN CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0002378 cysN CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0001627 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0003143 cysN CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0001011 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0010820 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0000810 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0291071 cysN CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0006207 cysN CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0063856 cysN CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002042 cysN CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0000911 cysN CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0003975 cysN CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0008518 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0138391 cysN CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0004506 cysN/C CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0007226 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000024 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0003352 cysN CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007500 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0009046 cysN CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0008586 cysN CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006465 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0007483 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006443 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0005478 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005500 cysN CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006608 cysN CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0007499 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005560 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0002818 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0002789 cysN CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0003664 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007661 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005560 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007157 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0005366 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0111589 cysN CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0084552 cysN CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0003543 cysN CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0099163 cysN CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006359 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0006705 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0007339 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0000212 cysN CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0267368 cysN CDS
Person Approved Go view Shigella boydii 227 ADV-0003049 cysN CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0008535 cysN CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003827 cysN CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0003371 cysN CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0074136 cysN CDS
Person Uncurated Go view Shigella flexneri 301 ABT-0089025 cysN CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0002935 cysN CDS
Person Approved Go view Shigella sonnei 046 ADD-0003169 cysN CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0002658 VC2559 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0006894 cysN CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0003196 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0002366 cysN CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000112 cysN CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000486 cysN CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000907 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0234936 cysN CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005074 cysN CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0003335 cysN CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0008150 cysN CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003990 cysN CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0126655 cysN CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006441 cysN CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0005932 cysN CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0002000 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005914 cysN CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004267 cysN CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030461 cysN CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007376 cysN CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000889 cysN CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003586 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0004766 cysN CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007318 cysN CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0000808 cysN CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000943 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004077 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0008075 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0002232 cysN CDS
Molecular Interactions to toptop
Author Approval Feature Name Technique Evidence Comment Annotated
Person Approved ABE-0009026 cysN lambda repressor assay Doodle - bnumber: b2751 Oct 2003
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2868992 to 2880419
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0009006pcmCDScomplement28688932869519Downstream
ABE-0009008umpGCDScomplement28695132870274Downstream
ABE-0009011truDCDScomplement28702552871304Downstream
ABE-0009013ispFCDScomplement28713012871780Downstream
ABE-0009017ispDCDScomplement28717802872490Downstream
ABE-0009019ftsBCDScomplement28725092872820Downstream
ABE-0009021ygbECDScomplement28730142873337Downstream
ABE-0009023cysCCDScomplement28733872873992Overlaps Downstream
ABE-0009026cysNCDScomplement28739922875419Matches
ABE-0009029cysDCDScomplement28754212876329Upstream
ABE-0009033iapCDSforward28765812877618Upstream
ABE-0009036cas2CDScomplement28785692878853Upstream
ABE-0009038cas1CDScomplement28788552879772Upstream
ABE-0009042casECDScomplement28797882880387Upstream
ABE-0009044casDCDScomplement28803742881048Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.