Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0009029 (cysD) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0009029 showshow history
Names
cysD JW2722 ECK2747 b2752
Product
sulfate adenylyltransferase subunit 2
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 2875421 2876329 909 303
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0001009
EnteroFam0009029: Trusted threshold=936.7; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR011784 (IPR011784 Sulphate adenylyltransferase, small subunit) Apr 2008
Automated Process Approved IPR014729 (IPR014729 Rossmann-like alpha/beta/alpha sandwich fold) Apr 2008
Automated Process Approved IPR002500 (IPR002500 Phosphoadenosine phosphosulphate reductase) Apr 2008
Automated Process Approved PF01507 (PF01507 Phosphoadenosine phosphosulfate reductase family) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Uncurated GO biological process GO:0019419 sulfate reduction GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR011784
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002500
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0006790 sulfur compound metabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Uncurated GO molecular function GO:0004781 sulfate adenylyltransferase (ATP) activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR011784
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR002500
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0016740 transferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002500
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name cysD Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym JW2722 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK2747 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b2752 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product sulfate adenylyltransferase subunit 2 Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Oct 2021
Person Uncurated alternate product name ATP-sulfurylase, subunit 2 (ATP:sulfate adenylyltransferase) Published Annotation - Database Name: GenProtEC Jan 2006
Person Approved alternate product name ATP:sulfurylase (ATP:sulfate adenylyltransferase), subunit 2 Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0009029: Trusted threshold=936.7; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0001009
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Protein Sequence Similarity - InterPro Domain: IPR014729
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR002500 Phosphoadenosine phosphosulphate reductase Protein Sequence Similarity - InterPro Domain: IPR002500
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR011784 Sulphate adenylyltransferase, small subunit Protein Sequence Similarity - InterPro Domain: IPR011784
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF01507 Phosphoadenosine phosphosulfate reductase family Protein Sequence Similarity - PFAM Model Name: PF01507
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Approved EC number 2.7.7.4 Published Annotation - Swiss-Prot Accession Number: P21156 Feb 2006
Person Uncurated MultiFun 1.8.2 (metabolism; metabolism of other compounds; sulfur metabolism) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0009029 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10186 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P21156 Published Annotation - Swiss-Prot Accession Number: P21156 Jan 2005
Automated Process Approved db xref GeneID:947217 Published Annotation - Entrez Gene Database ID: 947217
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref GI:1789109 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P21156 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Central intermediary metabolism: Sulfur metabolism Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note ATP:sulfurylase (ATP:sulfate adenylyltransferase), subunit 2; GO_process: GO:0006790 - sulfur metabolic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC75794.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 8.96
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Uncurated GO biological process GO:0019419 sulfate reduction GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR011784
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002500
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0006790 sulfur compound metabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Uncurated GO molecular function GO:0004781 sulfate adenylyltransferase (ATP) activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR011784
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR002500
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0016740 transferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002500
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0001009 cysD CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0002024 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000645 cysD CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000946 cysD CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000964 cysD CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001446 cysD CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0003295 CDS
Person Uncurated Go view Buchnera aphidicola APS ABZ-0129694 cysD CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0003437 cysD CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0000480 cysD CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0003577 cysD CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0004322 cysD CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0005365 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0014888 cysD CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0003396 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0004900 cysD CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0304610 cysD CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0000873 cysD CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002801 cysD CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0002792 cysD CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008234 cysD CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0002763 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008410 CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0002754 cysD CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0001535 cysD CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0006465 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007462 cysD CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006977 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0079475 cysD CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0003140 cysD CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0003652 cysD CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0008123 cysD CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008863 cysD CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0003215 cysD CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0007489 cysD CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000166 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007343 cysD CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005863 cysD CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005339 cysD CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0008035 cysD CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0008840 cysD CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007358 cysD CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006634 cysD CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007457 cysD CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0008276 cysD CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0008432 cysD CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007882 cysD CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008311 cysD CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0027731 cysD CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0006173 cysD CDS
Automated Process Approved Go view Escherichia coli HS ADR-0007565 cysD CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0003158 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0002580 cysD CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0002821 cysD CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0003536 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0003235 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0003108 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0003073 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0177322 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0003061 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0002876 cysD CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0133642 cysD CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0000898 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0003132 cysD CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0000368 cysD CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0004168 cysD CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0003123 cysD CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0001449 cysD CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0005360 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0002356 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0002578 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0002379 cysD CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0001626 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0003144 cysD CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0001010 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0010821 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0000811 CDS
Automated Process Approved Go view Pantoea stewartii DC283 ACV-0291072 cysD CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0006208 cysD CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0063857 cysD CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002043 cysD CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0003115 cysD CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0003976 cysD CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0008519 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0138388 cysD CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0004507 cysD CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0007227 cysD CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000023 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0003353 cysD CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007501 cysD CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0009051 cysD CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0008591 cysD CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006464 cysD CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0007484 cysD CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006444 cysD CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0005479 cysD CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005501 cysD CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006609 cysD CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0007500 cysD CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005559 cysD CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0002819 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0002790 cysD CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0003665 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007662 cysD CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005559 cysD CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007158 cysD CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0005367 cysD CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0111593 cysD CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0084553 cysD CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0003544 cysD CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0099167 cysD CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006358 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0006704 cysD CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0007340 cysD CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0000211 cysD CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0267369 cysD CDS
Person Approved Go view Shigella boydii 227 ADV-0003048 cysD CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0008534 cysD CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003826 cysD CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0003372 cysD CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0074137 cysD CDS
Person Approved Go view Shigella flexneri 301 ABT-0089026 cysD CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0002934 cysD CDS
Person Approved Go view Shigella sonnei 046 ADD-0003170 cysD CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0002659 VC2560 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0006895 cysD CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0003197 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0002364 cysD CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000113 cysD CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000485 cysD CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000906 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0234935 cysD CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005075 cysD CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0003334 cysD CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0008151 cysD CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003989 cysD CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0126659 cysD CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006440 cysD CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0005931 cysD CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005913 cysD CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004266 cysD CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030460 cysD CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007375 cysD CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000888 cysD CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003585 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0004765 cysD CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007319 cysD CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0000807 cysD CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000942 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004078 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0008071 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0002233 cysD CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB20923mutantTn5 InsertionRequest the StrainABE-0009029cysDcysD::Tn5KAN-I-SceI at position 584 in Plus orientation ,+ pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2870421 to 2881329
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0009011truDCDScomplement28702552871304Downstream
ABE-0009013ispFCDScomplement28713012871780Downstream
ABE-0009017ispDCDScomplement28717802872490Downstream
ABE-0009019ftsBCDScomplement28725092872820Downstream
ABE-0009021ygbECDScomplement28730142873337Downstream
ABE-0009023cysCCDScomplement28733872873992Downstream
ABE-0009026cysNCDScomplement28739922875419Downstream
ABE-0009029cysDCDScomplement28754212876329Matches
ABE-0009033iapCDSforward28765812877618Upstream
ABE-0009036cas2CDScomplement28785692878853Upstream
ABE-0009038cas1CDScomplement28788552879772Upstream
ABE-0009042casECDScomplement28797882880387Upstream
ABE-0009044casDCDScomplement28803742881048Upstream
ABE-0009046casCCDScomplement28810512882142Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.