Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0009057 (cysH) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0009057 showshow history
Names
cysH JW2732 ECK2757 b2762
Product
3'-phosphoadenosine 5'-phosphosulfate reductase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 2887578 2888312 735 245
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0001010
EnteroFam0009057: Trusted threshold=476.6; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR011800 (IPR011800 Phosphoadenosine phosphosulphate reductase CysH) Apr 2008
Automated Process Approved IPR004511 (IPR004511 Phosphoadenosine phosphosulphate/adenosine 5'-phosphosulphate reductase) Apr 2008
Automated Process Approved IPR014729 (IPR014729 Rossmann-like alpha/beta/alpha sandwich fold) Apr 2008
Automated Process Approved IPR002500 (IPR002500 Phosphoadenosine phosphosulphate reductase) Apr 2008
Automated Process Approved PF01507 (PF01507 Phosphoadenosine phosphosulfate reductase family) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0006790 sulfur compound metabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0019379 sulfate assimilation, phosphoadenylyl sulfate reduction by phosphoadenylyl-sulfate reductase (thioredoxin) GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR011800, IPR004511
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR004511
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002500
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Uncurated GO molecular function GO:0004604 phosphoadenylyl-sulfate reductase (thioredoxin) activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR011800, IPR004511
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0016740 transferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002500
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR002500
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name cysH Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym ECK2757 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW2732 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b2762 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product 3'-phosphoadenosine 5'-phosphosulfate reductase Published Annotation - PubMed ID: 16397293 Jan 2006
Person Uncurated alternate product name 3'-phosphoadenosine 5'-phosphosulfate (PAPS) reductase Published Annotation - Database Name: GenProtEC Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0009057: Trusted threshold=476.6; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0001010
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR002500 Phosphoadenosine phosphosulphate reductase Protein Sequence Similarity - InterPro Domain: IPR002500
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF01507 Phosphoadenosine phosphosulfate reductase family Protein Sequence Similarity - PFAM Model Name: PF01507
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Protein Sequence Similarity - InterPro Domain: IPR014729
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR004511 Phosphoadenosine phosphosulphate/adenosine 5'-phosphosulphate reductase Protein Sequence Similarity - InterPro Domain: IPR004511
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR011800 Phosphoadenosine phosphosulphate reductase CysH Protein Sequence Similarity - InterPro Domain: IPR011800
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Approved EC number 1.8.4.8 Published Annotation - Swiss-Prot Accession Number: P17854 Feb 2006
Person Uncurated MultiFun 1.8.2 (metabolism; metabolism of other compounds; sulfur metabolism) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0009057 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10189 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P17854 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1789121 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:947230 Published Annotation - Entrez Gene Database ID: 947230
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P17854 Published Annotation - Swiss-Prot Accession Number: P17854 Jan 2005
Person Approved function enzyme; Central intermediary metabolism: Sulfur metabolism Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note GO_process: GO:0006790 - sulfur metabolic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC75804.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 8.96
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Uncurated GO biological process GO:0019379 sulfate assimilation, phosphoadenylyl sulfate reduction by phosphoadenylyl-sulfate reductase (thioredoxin) GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR011800, IPR004511
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002500
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR004511
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO biological process GO:0006790 sulfur compound metabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Uncurated GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR002500
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO molecular function GO:0004604 phosphoadenylyl-sulfate reductase (thioredoxin) activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR011800, IPR004511
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0016740 transferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002500
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0002025 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001553 cysH CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001529 cysH CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000655 cysH CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001565 cysH CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0003293 CDS
Person Uncurated Go view Buchnera aphidicola APS ABZ-0129696 cysH CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0003439 cysH CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0000478 cysH CDS
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0003579 cysH CDS
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0004324 cysH CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0005363 CDS
Person Uncurated Go view Dickeya dadantii 3937 ABF-0014884 cysH CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0003398 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0004897 cysH CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0304617 cysH CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0000869 cysH CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002804 cysH CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0002779 cysH CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008230 cysH CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0002765 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008394 cysH CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0002756 cysH CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0001533 cysH CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0006453 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007478 cysH CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006965 cysH pseudogene
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0079477 cysH CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0003155 cysH CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0003667 cysH CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0008110 cysH CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008877 cysH CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0003218 cysH CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0007500 cysH CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000177 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007354 cysH CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005874 cysH CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005351 cysH CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0008024 cysH CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0008852 cysH CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007347 cysH CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006646 cysH CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007468 cysH CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0008288 cysH CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0008421 cysH CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007871 cysH CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008323 cysH CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0027743 cysH CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0006171 cysH_3 CDS
Automated Process Approved Go view Escherichia coli HS ADR-0007577 cysH CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0003155 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0002590 cysH CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0002831 cysH CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0003524 cysH CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0003247 cysH CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0003391 cysH CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0003076 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0177325 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0003075 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0002888 cysH CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0133653 cysH CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0000909 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0003135 cysH CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0000365 cysH CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0003866 cysH CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0003126 cysH CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0001455 cysH CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0005358 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0002360 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0002582 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0002390 cysH CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0001615 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0003155 cysH CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0000999 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0010825 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0000815 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0291091 cysH CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0006212 cysH CDS
Person Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0063859 cysH CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002044 cysH CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0003108 cysH CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0003983 cysH CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0008521 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0138381 cysH CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0007243 cysH CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000018 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0003365 cysH CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007513 cysH CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0009067 cysH CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0008607 cysH CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006449 cysH CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0007500 cysH CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006460 cysH CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0005483 cysH CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005516 cysH CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006623 cysH CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0007515 cysH CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005546 cysH CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0002830 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0002801 cysH CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0003670 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007677 cysH CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005543 cysH CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007172 cysH CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0005381 cysH CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0111605 cysH CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0084564 cysH CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0003556 cysH CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0099200 cysH CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006336 cysH CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0006686 cysH CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0007355 cysH CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0000208 cysH CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0267378 cysH CDS
Person Approved Go view Shigella boydii 227 ADV-0002917 cysH CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0008525 cysH CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003814 cysH CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0003389 cysH CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0074140 cysH CDS
Person Approved Go view Shigella flexneri 301 ABT-0089029 cysH CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0002931 cysH CDS
Person Approved Go view Shigella sonnei 046 ADD-0003187 cysH CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0000419 VC0386 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0006899 cysH CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002964 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0002352 cysH CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000116 cysH CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000480 cysH CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000902 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0285076 cysH pseudogene
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0285077 cysH_1 CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0003439 CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0004403 cysH_1 CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0256426 cysH pseudogene
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001644 CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0247560 cysH pseudogene
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0247562 cysH_1 CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000883 CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003580 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007324 cysH CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0000803 cysH CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000937 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004082 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0008063 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0002235 cysH CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB20924mutantTn5 InsertionRequest the StrainABE-0009057cysHcysH::Tn5KAN-I-SceI at position 265 in Minus orientation ,+ pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2882578 to 2893312
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0009048casBCDScomplement28821552882637Downstream
ABE-0009050casACDScomplement28826302884138Downstream
ABE-0009054cas3CDScomplement28845532887219Downstream
ABE-0285544sokXncRNAforward28873542887409Downstream
ABE-0009057cysHCDScomplement28875782888312Matches
ABE-0285545repeat_regionforward28883342888370Upstream
ABE-0009061cysICDScomplement28883872890099Upstream
ABE-0009063cysJCDScomplement28900992891898Upstream
ABE-0009068queDCDSforward28922142892579Upstream
ABE-0009070ygcNCDSforward28926572893928Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.