Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0009061 (cysI) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0009061 showshow history
Names
cysI JW2733 ECK2758 cysQ b2763
Product
sulfite reductase hemoprotein subunit
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 2888387 2890099 1713 571
Sequence

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0001011
EnteroFam0009061: Trusted threshold=1639.6; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR011786 (IPR011786 Sulphite reductase (NADPH) hemoprotein, beta subunit) Apr 2008
Automated Process Approved IPR008287 (IPR008287 (DEPRECATED) Ferredoxin-nitrite/sulphite reductase) Apr 2008
Automated Process Approved IPR006066 (IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site) Apr 2008
Automated Process Approved IPR006067 (IPR006067 Nitrite/sulphite reductase 4Fe-4S domain) Apr 2008
Automated Process Approved IPR005117 (IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain) Apr 2008
Automated Process Approved IPR036136 (IPR036136 Nitrite/Sulfite reductase ferredoxin-like domain superfamily) Jul 2018
Automated Process Approved PF03460 (PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain) Jul 2018
Automated Process Approved PF01077 (PF01077 Nitrite and sulphite reductase 4Fe-4S domain) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0006790 sulfur compound metabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR005117, IPR006067, IPR036136
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO biological process GO:0008652 cellular amino acid biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR011786
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0042128 nitrate assimilation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008287
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006118 (OBSOLETE) electron transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006066
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0009337 sulfite reductase complex (NADPH) GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR011786
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO molecular function GO:0050661 NADP binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR011786
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO molecular function GO:0051539 4 iron, 4 sulfur cluster binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR011786
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO molecular function GO:0004783 sulfite reductase (NADPH) activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR011786
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0016664 oxidoreductase activity, acting on other nitrogenous compounds as donors, iron-sulfur protein as acceptor GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008287
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006066
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0020037 heme binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006066
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0051536 iron-sulfur cluster binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006066
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name cysI Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym cysQ Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved synonym ECK2758 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW2733 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b2763 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product sulfite reductase hemoprotein subunit Published Annotation - EcoCyc Accession Number: EG10190
Reference: Escherichia coli K-12 MG1655 		Oct 2021
Person Approved alternate product name sulfite reductase, beta subunit, NAD(P)-binding, heme-binding Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name sulfite reductase, alpha subunit Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0009061: Trusted threshold=1639.6; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0001011
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR011786 Sulphite reductase (NADPH) hemoprotein, beta subunit Protein Sequence Similarity - InterPro Domain: IPR011786
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain Protein Sequence Similarity - PFAM Model Name: PF03460
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF01077 Nitrite and sulphite reductase 4Fe-4S domain Protein Sequence Similarity - PFAM Model Name: PF01077
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain Protein Sequence Similarity - InterPro Domain: IPR005117
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR036136 Nitrite/Sulfite reductase ferredoxin-like domain superfamily Protein Sequence Similarity - InterPro Domain: IPR036136
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR008287 (DEPRECATED) Ferredoxin-nitrite/sulphite reductase Protein Sequence Similarity - InterPro Domain: IPR008287
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site Protein Sequence Similarity - InterPro Domain: IPR006066
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR006067 Nitrite/sulphite reductase 4Fe-4S domain Protein Sequence Similarity - InterPro Domain: IPR006067
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Automated Process Uncurated EC number 1.-.-.- Published Annotation - Database Name: EC2GO: GO:0016491
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Approved EC number 1.8.1.2 Published Annotation - Swiss-Prot Accession Number: P17846 Feb 2006
Person Uncurated MultiFun 1.8.2 (metabolism; metabolism of other compounds; sulfur metabolism) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Uncurated comment CysI is a subunit of flavin reductase / sulfite reductase-(NADPH) Published Annotation - Web Resource URL: http://biocyc.org/ECOLI/NEW-IMAGE?object=BETACOMP-MONOMER
Reference: Escherichia coli 		Jan 2007
Automated Process Approved db xref EcoGene:EG10190 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0009061 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:947231 Published Annotation - Entrez Gene Database ID: 947231
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref GI:1789122 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P17846 Published Annotation - Swiss-Prot Accession Number: P17846 Jan 2005
Automated Process Approved db xref UniProtKB/Swiss-Prot:P17846 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Central intermediary metabolism: Sulfur metabolism Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note sulfite reductase, alpha subunit; GO_process: GO:0006790 - sulfur metabolic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC75805.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Unknown Predicted by PSORTb - PSORTb Final_Score: 2.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Uncurated GO biological process GO:0006790 sulfur compound metabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0008652 cellular amino acid biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR011786
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR005117, IPR006067, IPR036136
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0042128 nitrate assimilation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008287
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006118 (OBSOLETE) electron transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006066
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0009337 sulfite reductase complex (NADPH) GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR011786
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0016664 oxidoreductase activity, acting on other nitrogenous compounds as donors, iron-sulfur protein as acceptor GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008287
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006066
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0051539 4 iron, 4 sulfur cluster binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR011786
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO molecular function GO:0050661 NADP binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR011786
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO molecular function GO:0004783 sulfite reductase (NADPH) activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR011786
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0051536 iron-sulfur cluster binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006066
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0020037 heme binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006066
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0001011 cysI CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000185 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000839 cysI CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001167 cysI CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000232 cysI CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001525 cysI CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0003292 CDS
Person Uncurated Go view Buchnera aphidicola APS ABZ-0129697 cysI CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0003440 cysI CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0000477 cysI CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0003580 cysI CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0004325 cysI CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0005362 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0014883 cysI CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0003399 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0004896 cysI CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0304619 cysI CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0000868 cysI CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002805 cysI CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0002777 cysI CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008229 cysI CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0002766 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008393 cysI CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0002757 cysI CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0001532 cysI CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0006452 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007479 cysI CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006964 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0079478 cysI CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0003156 cysI CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0003668 cysI CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0008109 cysI CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008878 cysI CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0003219 cysI CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0007501 cysI CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000178 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007355 cysI CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005875 cysI CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005352 cysI CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0008023 cysI CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0008853 cysI CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007346 cysI CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006647 cysI CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007469 cysI CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0008289 cysI CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0008420 cysI CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007870 cysI CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008324 cysI CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0027744 cysI CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0006170 cysI CDS
Automated Process Approved Go view Escherichia coli HS ADR-0007578 cysI CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0003154 CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0002832 cysI CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0003523 cysI CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0003248 cysI CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0003390 cysI CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0003077 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0177326 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0003076 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0002889 cysI CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0133654 cysI CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0000910 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0003136 cysI CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0000364 cysI CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0003867 cysI CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0003127 cysI CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0001456 cysI CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0005357 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0002361 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0002583 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0002391 cysI CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0001614 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0003156 cysI CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0000998 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0010826 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0000816 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0291092 cysI CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0006213 cysI CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0063860 cysI CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002040 cysI CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0000913 cysI CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0003984 cysI CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0138379 cysI CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0007244 cysI CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000017 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0003367 cysI CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007514 cysI CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0009069 cysI CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0008609 cysI CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006448 cysI CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0007501 cysI CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006461 cysI CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0005484 cysI CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005517 cysI CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006624 cysI CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0007516 cysI CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005545 cysI CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0002831 CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0002802 cysI CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0003671 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007678 cysI CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005542 cysI CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007173 cysI CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0005382 cysI CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0111607 cysI CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0084565 cysI CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0003557 cysI CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0099203 cysI CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006335 cysI CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0006685 cysI CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0007356 cysI CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0000207 cysI CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0267379 cysI CDS
Person Approved Go view Shigella boydii 227 ADV-0002918 cysI CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0008524 cysI CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003813 cysI CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0003390 cysI CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0074142 cysI CDS
Person Approved Go view Shigella flexneri 301 ABT-0089030 cysI CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0002930 cysI CDS
Person Approved Go view Shigella sonnei 046 ADD-0003188 cysI CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0000418 VC0385 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0006901 cysI CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002965 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0002347 cysI CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000117 cysI CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000479 cysI CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000901 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0234927 cysI CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0003440 cysI CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0008157 cysI CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003985 cysI CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0126669 cysI CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006434 cysI CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001643 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005908 cysI CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004261 cysI CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030456 cysI CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007369 cysI CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000882 CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003579 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007325 cysI CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0000802 cysI CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000936 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004083 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0008059 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0002236 cysI CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB20925mutantTn5 InsertionRequest the StrainABE-0009061cysIcysI::Tn5KAN-I-SceI at position 625 in Plus orientation ,+ pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2883387 to 2895099
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0009050casACDScomplement28826302884138Downstream
ABE-0009054cas3CDScomplement28845532887219Downstream
ABE-0285544sokXncRNAforward28873542887409Downstream
ABE-0009057cysHCDScomplement28875782888312Downstream
ABE-0285545repeat_regionforward28883342888370Downstream
ABE-0009061cysICDScomplement28883872890099Matches
ABE-0009063cysJCDScomplement28900992891898Overlaps Upstream
ABE-0009068queDCDSforward28922142892579Upstream
ABE-0009070ygcNCDSforward28926572893928Upstream
ABE-0009072ygcOCDSforward28939192894179Upstream
ABE-0009074ygcPCDSforward28941962894771Upstream
ABE-0285546repeat_regionforward28948082894874Upstream
ABE-0009077ygcQCDScomplement28949192895779Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.