Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0009169 (sdaC) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0009169 showshow history
Names
sdaC JW2767 ECK2791 dcrA b2796
Product
L-serine:H+ symporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 2928229 2929518 1290 430
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR004694 (IPR004694 Hydroxy amino acid transporter) Apr 2008
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0006564 L-serine biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0006865 amino acid transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR004694
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004694
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004694
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Uncurated GO molecular function GO:0015171 amino acid transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR004694
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004694
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name sdaC Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym dcrA Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved synonym JW2767 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK2791 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b2796 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product L-serine:H+ symporter Published Annotation - EcoCyc Accession Number: EG12142
Reference: Escherichia coli K-12 MG1655 		Oct 2021
Person Approved alternate product name probable serine transporter Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Approved alternate product name predicted serine transporter Published Annotation - PubMed ID: 16397293 Jan 2006
Person Uncurated alternate product name putative serine transport protein (HAAAP family) Published Annotation - Database Name: GenProtEC Jan 2006
Protein Family
Automated Process Approved protein family IPR004694 Hydroxy amino acid transporter Protein Sequence Similarity - InterPro Domain: IPR004694
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Uncurated MultiFun 4.2.A.42 (transport; Electrochemical potential driven transporters; Porters (Uni-, Sym- and Antiporters); The Hydroxy/Aromatic Amino Acid Permease (HAAAP) Family) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.S.167 (transport; substrate; serine) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.3 (location of gene products; inner membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.5.1.11 (metabolism; building block biosynthesis; amino acids; serine) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG12142 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0009169 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1789160 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P0AAD6 Published Annotation - Swiss-Prot Accession Number: P0AAD6 Jan 2006
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0AAD6 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:947264 Published Annotation - Entrez Gene Database ID: 947264
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved function putative transport; Transport of small molecules: Amino acids, amines Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note probable serine transporter; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane; GO_process: GO:0006564 - L-serine biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC75838.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Uncurated GO biological process GO:0006564 L-serine biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0006865 amino acid transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR004694
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004694
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004694
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Uncurated GO molecular function GO:0015171 amino acid transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR004694
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004694
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000995 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000561 sdaC CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000339 sdaC CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000298 sdaC CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000194 sdaC CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0002335 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0001434 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0003469 sdaC CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0000457 stp CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0003617 sdaC_3 CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0004349 sdaC_2 CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0005859 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0017172 sdaC CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0003024 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0004872 stp CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0300160 sdaC CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0001447 sdaC CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002254 sdaC CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0002743 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008998 CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0002807 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008355 CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0002793 sdaC CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0001493 sdaC CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0006414 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0005893 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008970 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0079519 sdaC CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0003196 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009801 CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008957 CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0003257 sdaC CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0007537 CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0004158 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007398 CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005918 CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005395 CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009115 CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0008896 CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0010133 CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006695 CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006192 CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0010061 CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008368 CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0027785 sdaC CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0006124 sdaC CDS
Automated Process Approved Go view Escherichia coli HS ADR-0007616 CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0003256 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0002619 sdaC CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0002865 sdaC CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0003490 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0003636 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0003357 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0003114 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0177364 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0003113 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0002934 CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0133693 sdaC CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0000953 CDS
Person Approved Go view Escherichia coli UTI89 (UPEC) AEA-0003176 sdaC CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0000171 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0002208 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0003148 sdaC CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0001478 sdaC CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0007533 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0000397 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0002960 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0000435 sdaC CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0003770 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0001148 sdaC CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0003125 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0008614 CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0004234 sdaC CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0063446 sdaC CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002708 sdaC CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0001976 sdaC CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000423 sdaC CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0008011 CDS
Person Approved Go view Pseudomonas syringae pv. tomato DC3000 ADG-0001790 sdaC CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0007280 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004925 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0003401 sdaC CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007548 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0009162 sdaC CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0008700 sdaC CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006414 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0007537 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006499 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0005512 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005553 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006658 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0007551 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005516 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0002862 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0002833 sdaC CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0003709 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007708 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005507 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007202 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0005410 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0111668 sdaC CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0084596 sdaC CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0003586 sdaC CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0099270 sdaC CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006301 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0006648 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0007621 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0004163 CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0264474 CDS
Person Approved Go view Shigella boydii 227 ADV-0002952 sdaC CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0008487 CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007547 CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0003445 sdaC CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0074180 sdaC CDS
Person Approved Go view Shigella flexneri 301 ABT-0089061 sdaC CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0003069 sdaC CDS
Person Approved Go view Shigella sonnei 046 ADD-0003229 sdaC CDS
Person Uncurated Go view Trabulsiella guamensis ATCC 49490 [T] APH-0002728 sdaC CDS
Person Approved Go view Vibrio cholerae N16961 ADH-0001731 VC1658 CDS
Person Uncurated Go view Wigglesworthia morsitans AEQ-0000013 sdaC CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0002711 sdaC CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002112 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0004468 b2796 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001269 sdaC CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003322 sdaC CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003195 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0237262 sdaC2 CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005662 sdaC CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000752 sdaC CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005432 sdaC CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002063 sdaC CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0119647 sdaC CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006191 sdaC CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0004604 sdaC CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0002534 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005260 sdaC CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005150 sdaC CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0032603 sdaC CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005300 sdaC CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0003193 sdaC CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0002850 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005960 sdaC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0006642 sdaC CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0001424 sdaC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0001719 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0003248 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0007910 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0002268 sdaC CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB20929mutantTn5 InsertionRequest the StrainABE-0009169sdaCsdaC::Tn5KAN-I-SceI at position 505 in Plus orientation ,- pKD465Blattner Laboratory
FB20930mutantTn5 InsertionRequest the StrainABE-0009169sdaCsdaC::Tn5KAN-I-SceI at position 505 in Plus orientation ,+ pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2923229 to 2934518
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0009147truCCDScomplement29230022923784Upstream
ABE-0009152yqcCCDScomplement29237842924113Upstream
ABE-0047213csrBncRNAcomplement29241562924524Upstream
ABE-0009154sydCDScomplement29247352925280Upstream
ABE-0009162queFCDSforward29253482926196Upstream
ABE-0009166ppnNCDSforward29263082927672Upstream
ABE-0009169sdaCCDSforward29282292929518Matches
ABE-0009172sdaBCDSforward29295762930943Downstream
ABE-0009174ygdGCDSforward29310552931810Downstream
ABE-0285548repeat_regionforward29318172931846Downstream
ABE-0009177fucOCDScomplement29318652933013Downstream
ABE-0009179fucACDScomplement29330412933688Downstream
ABE-0009187fucPCDSforward29342352935551Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.