Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0009179 (fucA) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0009179 showshow history
Names
fucA prd JW2771 ECK2795 fucC b2800
Product
L-fuculose-1-phosphate aldolase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 2933041 2933688 648 216
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR001303 (IPR001303 Class II aldolase/adducin N-terminal) Apr 2008
Automated Process Approved IPR004782 (IPR004782 L-fucose phosphate aldolase) Apr 2008
Automated Process Approved IPR036409 (IPR036409 Class II aldolase/adducin N-terminal domain superfamily) Jul 2018
Automated Process Approved PF00596 (PF00596 Class II Aldolase and Adducin N-terminal domain) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006004 fucose metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004782
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0008738 L-fuculose-phosphate aldolase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004782
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0046872 metal ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001303
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0008270 zinc ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004782
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name fucA Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym fucC Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Automated Process Approved synonym prd Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved synonym JW2771 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK2795 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b2800 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product L-fuculose-1-phosphate aldolase Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name L-fuculose-1-phosphate aldolase Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Automated Process Approved protein family IPR004782 L-fucose phosphate aldolase Protein Sequence Similarity - InterPro Domain: IPR004782
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR001303 Class II aldolase/adducin N-terminal Protein Sequence Similarity - InterPro Domain: IPR001303
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF00596 Class II Aldolase and Adducin N-terminal domain Protein Sequence Similarity - PFAM Model Name: PF00596
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR036409 Class II aldolase/adducin N-terminal domain superfamily Protein Sequence Similarity - InterPro Domain: IPR036409
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Approved EC number 4.1.2.17 Published Annotation - Swiss-Prot Accession Number: P0AB87 Feb 2006
Person Uncurated MultiFun 1.1.1 (metabolism; carbon utilization; carbon compounds) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10348 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1789164 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0AB87 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P0AB87 Published Annotation - Swiss-Prot Accession Number: P0AB87 Jan 2006
Automated Process Approved db xref ASAP:ABE-0009179 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:947282 Published Annotation - Entrez Gene Database ID: 947282
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved function enzyme; Degradation of small molecules: Carbon compounds Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note GO_process: GO:0016052 - carbohydrate catabolic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC75842.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Unknown Predicted by PSORTb - PSORTb Final_Score: 2.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Uncurated GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006004 fucose metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004782
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0046872 metal ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001303
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0008738 L-fuculose-phosphate aldolase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004782
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0008270 zinc ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004782
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0006826 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002848 fucA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0003084 fucA CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0009099 fucA CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0002842 fucA CDS
Ortholog
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0000712 fucA CDS
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0003620 fucA_2 CDS
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0004353 fucA CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0002739 fucA CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008994 fucA CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0002812 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008351 fucA CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0002797 fucA CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0001489 fucA CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0006410 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0005889 fucA CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008966 fucA pseudogene
Person Uncurated Go view Escherichia coli BL21(DE3) AHL-0005434 pseudogene
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0079523 fucA CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0003200 fucA CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0003713 fucA CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009797 fucA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008953 fucA CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0003261 fucA CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0007541 fucA CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0004162 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007402 fucA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005922 fucA CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005399 fucA CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009119 fucA CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0008900 fucA CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0010129 fucA CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006699 fucA CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0010077 fucA CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006196 fucA CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0010065 fucA CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0009363 fucA CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008372 fucA CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0027789 fucA CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0006120 fucA_2 CDS
Automated Process Approved Go view Escherichia coli HS ADR-0007620 fucA CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0003252 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0002623 fucA CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0002869 fucA CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0003486 fucA CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0003632 fucA CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0003353 fucA CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0003118 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0177368 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0003117 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0002938 fucA CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0133697 fucA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0000957 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0003180 fucA CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0003007 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0001146 fucA CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0003160 fucA CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0007284 fucA CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004920 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0003410 fucA CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007552 fucA CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0009175 fucA CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0008712 fucA CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006410 fucA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0007541 fucA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006503 fucA CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0005516 fucA CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005557 fucA CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006662 fucA CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0007555 fucA CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005512 fucA CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0002866 CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0002837 fucA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0003715 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007712 fucA CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005503 fucA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007206 fucA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0005414 fucA CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0111676 fucA CDS
Person Uncurated Go view Salmonella Typhi Ty2 ABS-0084600 fucA CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0003592 fucA CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0099281 fucA CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006297 fucA CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0006644 fucA CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0007625 fucA CDS
Person Approved Go view Shigella boydii 227 ADV-0002956 fucA CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0008483 CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007551 fucA CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0003449 fucA CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0074184 fucA CDS
Person Approved Go view Shigella flexneri 301 ABT-0089065 fucA CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0003073 fucA CDS
Person Approved Go view Shigella sonnei 046 ADD-0003233 fucA CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001052 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000023 fucA_1 CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000580 fucA_1 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0006123 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0002829 fucA CDS
Molecular Interactions to toptop
Author Approval Feature Name Technique Evidence Comment Annotated
Person Approved ABE-0009179 fucA lambda repressor assay Doodle - bnumber: b2800 Oct 2003
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB22071mutantTn5 InsertionRequest the StrainABE-0009179fucAfucA::Tn5KAN-I-SceI at position 429 in Plus orientation ,+ pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2928041 to 2938688
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0009169sdaCCDSforward29282292929518Downstream
ABE-0009172sdaBCDSforward29295762930943Downstream
ABE-0009174ygdGCDSforward29310552931810Downstream
ABE-0285548repeat_regionforward29318172931846Downstream
ABE-0009177fucOCDScomplement29318652933013Downstream
ABE-0009179fucACDScomplement29330412933688Matches
ABE-0009187fucPCDSforward29342352935551Upstream
ABE-0009189fucICDSforward29355842937359Upstream
ABE-0285549repeat_regionforward29374262937449Upstream
ABE-0009191fucKCDSforward29374682938886Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.