Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0009187 (fucP) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0009187 showshow history
Names
fucP JW2772 ECK2796 prd b2801
Product
L-fucose transporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 2934235 2935551 1317 439
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR011701 (IPR011701 Major facilitator superfamily) Apr 2008
Automated Process Approved IPR007114 (IPR007114 (DEPRECATED) Major facilitator superfamily) Apr 2008
Automated Process Approved IPR005275 (IPR005275 L-fucose-proton symporter FucP) Apr 2008
Automated Process Approved IPR036259 (IPR036259 MFS transporter superfamily) Jul 2018
Automated Process Approved PF07690 (PF07690 Major Facilitator Superfamily) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0015756 fucose transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR005275
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO biological process GO:0055085 transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR011701
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007114
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007114
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Uncurated GO molecular function GO:0015150 fucose transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR005275
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007114
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name fucP Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym JW2772 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym prd Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved synonym ECK2796 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b2801 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product L-fucose transporter Published Annotation - PubMed ID: 16397293 Jan 2006
Person Uncurated alternate product name fucose transport protein (MFS family) Published Annotation - Database Name: GenProtEC Jan 2006
Person Approved alternate product name fucose permease Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Automated Process Approved protein family IPR005275 L-fucose-proton symporter FucP Protein Sequence Similarity - InterPro Domain: IPR005275
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR036259 MFS transporter superfamily Protein Sequence Similarity - InterPro Domain: IPR036259
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR007114 (DEPRECATED) Major facilitator superfamily Protein Sequence Similarity - InterPro Domain: IPR007114
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR011701 Major facilitator superfamily Protein Sequence Similarity - InterPro Domain: IPR011701
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF07690 Major Facilitator Superfamily Protein Sequence Similarity - PFAM Model Name: PF07690
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.3 (location of gene products; inner membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.2.A.1 (transport; Electrochemical potential driven transporters; Porters (Uni-, Sym- and Antiporters); The Major Facilitator Superfamily (MFS)) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.1.1 (metabolism; carbon utilization; carbon compounds) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.S.64 (transport; substrate; fucose) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10352 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1789166 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P11551 Published Annotation - Swiss-Prot Accession Number: P11551 Jan 2005
Automated Process Approved db xref UniProtKB/Swiss-Prot:P11551 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:947487 Published Annotation - Entrez Gene Database ID: 947487
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref ASAP:ABE-0009187 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function transport; Transport of small molecules: Carbohydrates, organic acids, alcohols Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note fucose permease; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane; GO_process: GO:0016052 - carbohydrate catabolic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC75843.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Uncurated GO biological process GO:0015756 fucose transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR005275
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007114
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO biological process GO:0055085 transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR011701
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007114
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Uncurated GO molecular function GO:0015150 fucose transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR005275
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007114
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0006827 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002972 fucP CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0003057 fucP CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0002575 fucP CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0002905 fucP CDS
Ortholog
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001300 fucP CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0002737 fucP CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0002813 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008350 fucP CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0002798 fucP CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0001487 fucP CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0006409 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0005887 fucP CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008965 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0079525 fucP CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0003201 CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0003714 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009796 fucP CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008952 fucP CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0003262 fucP CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0007542 fucP CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0004163 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007403 fucP CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005923 fucP CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005400 fucP CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009120 fucP CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0008901 fucP CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0010128 fucP CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006700 fucP CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0010078 fucP CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006197 fucP CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0010066 fucP CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0009364 fucP CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008373 fucP CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0027790 fucP CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0006118 fucP_1 CDS
Automated Process Approved Go view Escherichia coli HS ADR-0007621 fucP CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0003251 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0002624 fucP CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0002870 fucP CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0003485 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0003631 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0003352 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0003120 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0003118 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0002940 fucP CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0133698 fucP CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0000958 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0003182 fucP CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0001144 fucP CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0003161 fucP CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0007287 fucP CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004919 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0003412 fucP CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007555 fucP CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0009178 CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0008714 CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006407 fucP CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0007544 fucP CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006506 fucP CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0005518 fucP CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005560 fucP CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006665 fucP CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0007558 fucP CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005509 fucP CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0002867 CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0002838 fucP CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0003718 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007715 fucP CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005500 fucP CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007209 fucP CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0005417 fucP CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0111678 fucP CDS
Person Uncurated Go view Salmonella Typhi Ty2 ABS-0084601 fucP CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006294 fucP CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0006641 fucP CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0007628 fucP CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0267139 CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007553 fucP CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0074185 fucP CDS
Person Approved Go view Shigella flexneri 301 ABT-0089066 fucP CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0003074 fucP CDS
Person Approved Go view Shigella sonnei 046 ADD-0003234 fucP CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001053 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000024 fucP_1 CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000579 fucP_1 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0006129 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0002828 fucP CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2929235 to 2940551
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0009169sdaCCDSforward29282292929518Upstream
ABE-0009172sdaBCDSforward29295762930943Upstream
ABE-0009174ygdGCDSforward29310552931810Upstream
ABE-0285548repeat_regionforward29318172931846Upstream
ABE-0009177fucOCDScomplement29318652933013Upstream
ABE-0009179fucACDScomplement29330412933688Upstream
ABE-0009187fucPCDSforward29342352935551Matches
ABE-0009189fucICDSforward29355842937359Downstream
ABE-0285549repeat_regionforward29374262937449Downstream
ABE-0009191fucKCDSforward29374682938886Downstream
ABE-0009193fucUCDSforward29388882939310Downstream
ABE-0009195fucRCDSforward29393682940099Downstream
ABE-0009197rlmMCDScomplement29401432941243Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.