Escherichia coli K-12 MG1655
Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0009189 (fucI) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0009189 showshow history
Names
fucI JW2773 ECK2797 b2802
Product
L-fucose isomerase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 2935584 2937359 1776 592
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR012888 (IPR012888 L-fucose isomerase, N-terminal-1) Apr 2008
Automated Process Approved IPR012889 (IPR012889 L-fucose isomerase, N-terminal-2) Apr 2008
Automated Process Approved IPR004216 (IPR004216 L-fucose/L-arabinose isomerase, C-terminal) Apr 2008
Automated Process Approved IPR009015 (IPR009015 L-fucose isomerase, N-terminal/central domain superfamily) Apr 2008
Automated Process Approved IPR005763 (IPR005763 L-fucose isomerase) Apr 2008
Automated Process Approved IPR015888 (IPR015888 L-fucose isomerase, C-terminal) Jul 2018
Automated Process Approved PF02952 (PF02952 L-fucose isomerase, C-terminal domain) Jul 2018
Automated Process Approved PF07881 (PF07881 L-fucose isomerase, first N-terminal domain) Jul 2018
Automated Process Approved PF07882 (PF07882 L-fucose isomerase, second N-terminal domain) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0005996 monosaccharide metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR009015
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved GO biological process GO:0019317 fucose catabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005763
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved GO biological process GO:0006004 fucose metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012888
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012888
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655
Feb 2008
Automated Process Uncurated GO molecular function GO:0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR009015
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Uncurated GO molecular function GO:0030145 manganese ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR005763
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved GO molecular function GO:0008736 L-fucose isomerase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012888
Reference: Escherichia coli K-12 MG1655
Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name fucI Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655
Oct 1998
Person Approved synonym ECK2797 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW2773 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b2802 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product L-fucose isomerase Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name L-fucose isomerase Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655
Jan 2006
Protein Family
Automated Process Approved protein family IPR012888 L-fucose isomerase, N-terminal-1 Protein Sequence Similarity - InterPro Domain: IPR012888
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved protein family IPR012889 L-fucose isomerase, N-terminal-2 Protein Sequence Similarity - InterPro Domain: IPR012889
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved protein family IPR004216 L-fucose/L-arabinose isomerase, C-terminal Protein Sequence Similarity - InterPro Domain: IPR004216
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved protein family PF07881 L-fucose isomerase, first N-terminal domain Protein Sequence Similarity - PFAM Model Name: PF07881
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved protein family PF07882 L-fucose isomerase, second N-terminal domain Protein Sequence Similarity - PFAM Model Name: PF07882
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved protein family PF02952 L-fucose isomerase, C-terminal domain Protein Sequence Similarity - PFAM Model Name: PF02952
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved protein family IPR015888 L-fucose isomerase, C-terminal Protein Sequence Similarity - InterPro Domain: IPR015888
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved protein family IPR005763 L-fucose isomerase Protein Sequence Similarity - InterPro Domain: IPR005763
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved protein family IPR009015 L-fucose isomerase, N-terminal/central domain superfamily Protein Sequence Similarity - InterPro Domain: IPR009015
Reference: Escherichia coli K-12 MG1655
Apr 2008
Other
Person Approved EC number 5.3.1.25 Published Annotation - Swiss-Prot Accession Number: P69922 Feb 2006
Person Uncurated MultiFun 1.1.1 (metabolism; carbon utilization; carbon compounds) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref GI:1789167 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref GeneID:946195 Published Annotation - Entrez Gene Database ID: 946195
Reference: Escherichia coli K-12 MG1655
Jun 2009
Automated Process Approved db xref EcoGene:EG10349 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P69922 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref ASAP:ABE-0009189 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Person Approved db xref UniProtKB:P69922 Published Annotation - Swiss-Prot Accession Number: P69922 Jan 2006
Person Approved function enzyme; Degradation of small molecules: Carbon compounds Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655
Oct 1998
Automated Process Approved note GO_process: GO:0016052 - carbohydrate catabolic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved protein id AAC75844.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655
Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655
Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655
Jan 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655
Feb 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0019317 fucose catabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005763
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved GO biological process GO:0006004 fucose metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012888
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Uncurated GO biological process GO:0005996 monosaccharide metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR009015
Reference: Escherichia coli K-12 MG1655
Jul 2018
Person Uncurated GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655
Feb 2008
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012888
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Uncurated GO molecular function GO:0030145 manganese ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR005763
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Uncurated GO molecular function GO:0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR009015
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved GO molecular function GO:0008736 L-fucose isomerase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012888
Reference: Escherichia coli K-12 MG1655
Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0006828 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002935 fucI CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0003209 fucI CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0002971 fucI CDS
Ortholog
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0000717 fucI CDS
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0003625 fucI CDS
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0004359 fucI CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0002736 fucI CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008988 fucI CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0002814 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008349 fucI CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0002799 fucI CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0001486 fucI CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0006408 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0005886 fucI CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008964 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0079526 fucI CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0003202 fucI CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0003715 fucI CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009795 fucI CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008951 fucI CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0003263 fucI CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0007543 fucI CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0004164 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007404 fucI CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005924 fucI CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005401 fucI CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009121 fucI CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0008902 fucI CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0010127 fucI CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006701 fucI CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0010079 fucI CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006198 fucI CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0010067 fucI CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0009365 fucI CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008374 fucI CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0027791 fucI CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0006117 fucI CDS
Automated Process Approved Go view Escherichia coli HS ADR-0007622 fucI CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0003250 fucI CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0002625 fucI CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0002871 fucI CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0003484 fucI CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0003630 fucI CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0003351 fucI CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0003121 fucI CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0177371 fucI CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0003119 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0002941 fucI CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0133699 fucI CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0000959 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0003183 fucI CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0003162 fucI CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0007288 fucI CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004918 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0003413 fucI CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007556 fucI CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0009182 fucI CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0008717 fucI CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006406 fucI CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0007545 fucI CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006507 fucI CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0005519 fucI CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005561 fucI CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006666 fucI CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0007559 fucI CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005508 fucI CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0002868 CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0002839 fucI CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0003719 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005499 fucI CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007210 fucI CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0005418 fucI CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0111679 fucI CDS
Person Uncurated Go view Salmonella Typhi Ty2 ABS-0084602 fucI CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0003595 fucI CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0099288 fucI CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006293 fucI CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0006640 fucI CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0007629 fucI CDS
Person Uncurated Go view Shigella boydii 227 ADV-0002961 fucI CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007554 fucI CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0003453 fucI CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0074186 fucI CDS
Person Approved Go view Shigella flexneri 301 ABT-0089067 fucI CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0003075 fucI CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001054 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000025 fucI CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000578 fucI CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0006133 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0002827 fucI CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)

Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB20937mutantTn5 InsertionRequest the StrainABE-0009189fucIfucI::Tn5KAN-I-SceI at position 1410 in Minus orientation ,+ pKD460Blattner Laboratory
FB20938mutantTn5 InsertionRequest the StrainABE-0009189fucIfucI::Tn5KAN-I-SceI at position 1410 in Minus orientation ,- pKD465Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2930584 to 2942359
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0009172sdaBCDSforward29295762930943Upstream
ABE-0009174ygdGCDSforward29310552931810Upstream
ABE-0285548repeat_regionforward29318172931846Upstream
ABE-0009177fucOCDScomplement29318652933013Upstream
ABE-0009179fucACDScomplement29330412933688Upstream
ABE-0009187fucPCDSforward29342352935551Upstream
ABE-0009189fucICDSforward29355842937359Matches
ABE-0285549repeat_regionforward29374262937449Downstream
ABE-0009191fucKCDSforward29374682938886Downstream
ABE-0009193fucUCDSforward29388882939310Downstream
ABE-0009195fucRCDSforward29393682940099Downstream
ABE-0009197rlmMCDScomplement29401432941243Downstream
ABE-0009199ygdDCDScomplement29412362941631Downstream
ABE-0009202gcvACDScomplement29416502942567Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.