Escherichia coli K-12 MG1655
Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0009218 (csdA) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0009218 showshow history
Names
csdA ygdJ JW2781 ECK2806 b2810
Product
cysteine sulfinate desulfinase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 2943337 2944542 1206 402
Sequence

Get full DNA or protein sequence

View sequence with flanking regions: bases upstream and bases downstream

Context

Browse sequence in GaPP

You last hovered over feature (none)
Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0001029
EnteroFam0009218: Trusted threshold=988.6; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043).
Jan 2006
Automated Process Approved IPR015421 (IPR015421 Pyridoxal phosphate-dependent transferase, major domain) Apr 2008
Automated Process Approved IPR000192 (IPR000192 Aminotransferase class V domain) Apr 2008
Automated Process Approved IPR015424 (IPR015424 Pyridoxal phosphate-dependent transferase) Apr 2008
Automated Process Approved IPR022471 (IPR022471 Cysteine desulphurase, catalytic subunit, CsdA) Jul 2018
Automated Process Approved PF00266 (PF00266 Aminotransferase class-V) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Uncurated GO biological process GO:0016226 iron-sulfur cluster assembly GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR022471
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000192
Reference: Escherichia coli K-12 MG1655
Apr 2008
Person Approved GO biological process GO:0006520 cellular amino acid metabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Approved GO biological process GO:0006790 sulfur compound metabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655
Feb 2008
Automated Process Uncurated GO molecular function GO:0031071 cysteine desulfurase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR022471
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved GO molecular function GO:0008483 transaminase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000192
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved GO molecular function GO:0030170 pyridoxal phosphate binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR015421
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR015421
Reference: Escherichia coli K-12 MG1655
Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name csdA Experimental - PubMed ID: 9278392
Reference: Escherichia coli
Nov 2003
Person Approved synonym ECK2806 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym ygdJ Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Person Approved synonym JW2781 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b2810 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product cysteine sulfinate desulfinase Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name cysteine sulfinate desulfinase Experimental - PubMed ID: 9278392
Reference: Escherichia coli
Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0009218: Trusted threshold=988.6; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0001029
Reference: EnteroFams
Jan 2006
Automated Process Approved protein family PF00266 Aminotransferase class-V Protein Sequence Similarity - PFAM Model Name: PF00266
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved protein family IPR015424 Pyridoxal phosphate-dependent transferase Protein Sequence Similarity - InterPro Domain: IPR015424
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved protein family IPR000192 Aminotransferase class V domain Protein Sequence Similarity - InterPro Domain: IPR000192
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved protein family IPR022471 Cysteine desulphurase, catalytic subunit, CsdA Protein Sequence Similarity - InterPro Domain: IPR022471
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved protein family IPR015421 Pyridoxal phosphate-dependent transferase, major domain Protein Sequence Similarity - InterPro Domain: IPR015421
Reference: Escherichia coli K-12 MG1655
Apr 2008
Other
Person Approved EC number 4.4.1.- Published Annotation - Swiss-Prot Accession Number: Q46925 Feb 2006
Automated Process Uncurated EC number 2.8.1.7 Published Annotation - Database Name: EC2GO: GO:0031071
Reference: Escherichia coli K-12 MG1655
Jul 2018
Person Approved MultiFun 1.8.2 (metabolism; metabolism of other compounds; sulfur metabolism) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Approved MultiFun 1.7.13 (metabolism; central intermediary metabolism; amino acid conversion) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref EcoGene:EG13082 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref GI:1789175 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Person Approved db xref UniProtKB:Q46925 Published Annotation - Swiss-Prot Accession Number: Q46925 Jan 2006
Automated Process Approved db xref UniProtKB/Swiss-Prot:Q46925 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref ASAP:ABE-0009218 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref GeneID:947275 Published Annotation - Entrez Gene Database ID: 947275
Reference: Escherichia coli K-12 MG1655
Jun 2009
Automated Process Approved function 1.7.13 metabolism; central intermediary metabolism; amino acid conversion Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved function 1.8.2 metabolism; metabolism of other compounds; sulfur metabolism Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved note GO_process: GO:0006790 - sulfur metabolic process; GO_process: GO:0006520 - cellular amino acid metabolic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved protein id AAC75852.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 8.96
Reference: Escherichia coli K-12 MG1655
Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655
Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Gene Ontology
Automated Process Uncurated GO biological process GO:0016226 iron-sulfur cluster assembly GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR022471
Reference: Escherichia coli K-12 MG1655
Jul 2018
Person Approved GO biological process GO:0006790 sulfur compound metabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Approved GO biological process GO:0006520 cellular amino acid metabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000192
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655
Feb 2008
Automated Process Approved GO molecular function GO:0030170 pyridoxal phosphate binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR015421
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Uncurated GO molecular function GO:0031071 cysteine desulfurase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR022471
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved GO molecular function GO:0008483 transaminase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000192
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR015421
Reference: Escherichia coli K-12 MG1655
Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0001029 csdA CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000873 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000758 csdA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001139 csdA CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000773 csdA CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001377 csdA CDS
Ortholog
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0002700 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0003479 csdA CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0000449 csdA CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0003634 csdA_1 CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0004368 csdA_2 CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0008198 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0015928 csdA CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0000955 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0004865 csdA CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0304711 csdA CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0000839 csdA CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002833 csdA CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0002727 csdA CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0009228 csdA CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0002822 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008340 csdA CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0002806 csdA CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0001478 csdA CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0006397 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0005877 csdA CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0010009 CsdA CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0079536 csdA CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0003211 csdA CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0003723 csdA CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0010176 csdA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008942 csdA CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0003272 csdA CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0007552 csdA CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0004172 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007413 csdA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005933 csdA CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005410 csdA CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009130 csdA CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0008911 csdA CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0010233 csdA CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006711 csdA CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0010088 csdA CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006207 csdA CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0010184 csdA CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0009374 csdA CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008383 csdA CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0027799 csdA CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0006107 csdA CDS
Automated Process Approved Go view Escherichia coli HS ADR-0007631 csdA CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0003242 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0002633 csdA CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0002880 csdA CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0003476 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0003622 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0003343 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0003129 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0177379 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0003127 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0002949 csdA CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0133708 csdA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0000967 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0003192 CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0002952 csdA CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0003170 csdA CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0001485 csdA CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0007928 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0002390 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0002611 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0002425 csdA CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0001580 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0003191 csdA CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0000964 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0010855 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0000845 CDS
Automated Process Approved Go view Pantoea stewartii DC283 ACV-0291123 csdA CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0006241 sufS2 CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0061252 csdA CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000572 csdA CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0000247 csdA CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0001646 csdA CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0005558 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0138241 csdA CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0001557 csdA CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0007297 csdA CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004909 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0003421 csdA CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007565 csdA CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0009212 csdA CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0008747 csdA CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006397 csdA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0007554 csdA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006516 csdA CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0005528 csdA CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005570 csdA CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006675 csdA CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0007568 csdA CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005499 csdA CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0002877 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0002848 csdA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0003729 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007726 csdA CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005490 csdA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007219 csdA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0005427 csdA CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0111695 csdA CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0084610 csdA CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0003603 csdA CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0099315 csdA CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006284 csdA CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0006631 csdA CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0007638 csdA CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0001876 csdA CDS
Person Approved Go view Shigella boydii 227 ADV-0002969 CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0008471 csdA CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007766 csdA CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0003461 CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0074194 csdA CDS
Person Approved Go view Shigella flexneri 301 ABT-0089075 CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0003083 CDS
Person Approved Go view Shigella sonnei 046 ADD-0003243 csdA CDS
Person Uncurated Go view Trabulsiella guamensis ATCC 49490 [T] APH-0002735 csdA CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0002402 VC2309 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0007226 csdA CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0003553 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0009565 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003435 csdA CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002460 csdA CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000534 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0241109 csdA CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007343 csdA CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000614 csdA CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005078 csdA CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002332 CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0118642 csdA CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0008428 csdA CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0007365 csdA CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0000844 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0009237 csdA CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006431 csdA CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0032917 csdA CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005626 csdA CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0003578 csdA CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0002017 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006083 csdA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004948 csdA CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0003121 csdA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0003751 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0001229 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0007878 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0002274 csdA CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)

Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB22484mutantTn5 InsertionRequest the StrainABE-0009218csdAb2810::Tn5KAN-I-SceI at position 791 in Plus orientation ,+ pKD460Blattner Laboratory
FB23221mutantTn5 InsertionRequest the StrainABE-0009218csdAb2810::Tn5KAN-I-SceI at position 791 in Plus orientation ,- pKD465Tim Durfee (durf@genome.wisc.edu)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2938337 to 2949542
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0009191fucKCDSforward29374682938886Upstream
ABE-0009193fucUCDSforward29388882939310Upstream
ABE-0009195fucRCDSforward29393682940099Upstream
ABE-0009197rlmMCDScomplement29401432941243Upstream
ABE-0009199ygdDCDScomplement29412362941631Upstream
ABE-0009202gcvACDScomplement29416502942567Upstream
ABE-0047263gcvBncRNAforward29426962942901Upstream
ABE-0009214ygdICDScomplement29429182943145Upstream
ABE-0009218csdACDSforward29433372944542Matches
ABE-0009220csdECDSforward29445422944985Overlaps Downstream
ABE-0285550repeat_regionforward29449942945027Downstream
ABE-0009223tcdACDScomplement29450362945842Downstream
ABE-0285551repeat_regionforward29458962945992Downstream
ABE-0009228mltACDScomplement29460812947178Downstream
ABE-0009232metZtRNAforward29473872947463Downstream
ABE-0009234metWtRNAforward29474972947573Downstream
ABE-0009236metVtRNAforward29476072947683Downstream
ABE-0009238amiCCDScomplement29477572949010Downstream
ABE-0009245argACDSforward29492422950573Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.