Escherichia coli K-12 MG1655
Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0009228 (mltA) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0009228 showshow history
Names
mltA mlt ygdM JW2784 ECK2809 waaN b2813
Product
membrane-bound lytic murein transglycosylase A
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 2946081 2947178 1098 366
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0001032
EnteroFam0009228: Trusted threshold=951.4; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043).
Jan 2006
Automated Process Approved IPR005300 (IPR005300 Lytic transglycosylase MltA, domain B) Apr 2008
Automated Process Approved IPR010611 (IPR010611 3D domain) Apr 2008
Automated Process Approved IPR026044 (IPR026044 Membrane-bound lytic murein transglycosylase A) Jul 2018
Automated Process Approved IPR036908 (IPR036908 RlpA-like domain superfamily) Jul 2018
Automated Process Approved PF06725 (PF06725 3D domain) Jul 2018
Automated Process Approved PF03562 (PF03562 MltA specific insert domain) Jul 2018
Automated Process Uncurated GH102 (GH102 Glycoside Hydrolase Family 102) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0009252 peptidoglycan biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0009254 peptidoglycan turnover GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010611
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved GO cellular component GO:0019867 outer membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010611
Reference: Escherichia coli K-12 MG1655
Apr 2008
Person Uncurated GO cellular component GO:0009279 cell outer membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005300
Reference: Escherichia coli K-12 MG1655
Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name mltA Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655
Sep 2007
Person Approved synonym waaN Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved synonym ECK2809 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym mlt Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved synonym ygdM Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Person Approved synonym JW2784 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b2813 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product membrane-bound lytic murein transglycosylase A Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name membrane-bound lytic murein transglycosylase A Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655
Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0009228: Trusted threshold=951.4; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0001032
Reference: EnteroFams
Jan 2006
Automated Process Approved protein family IPR005300 Lytic transglycosylase MltA, domain B Protein Sequence Similarity - InterPro Domain: IPR005300
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved protein family IPR010611 3D domain Protein Sequence Similarity - InterPro Domain: IPR010611
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved protein family IPR036908 RlpA-like domain superfamily Protein Sequence Similarity - InterPro Domain: IPR036908
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved protein family PF03562 MltA specific insert domain Protein Sequence Similarity - PFAM Model Name: PF03562
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Uncurated protein family GH102 Glycoside Hydrolase Family 102 Protein Sequence Similarity - CAZy Model Name: GH102
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved protein family PF06725 3D domain Protein Sequence Similarity - PFAM Model Name: PF06725
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved protein family IPR026044 Membrane-bound lytic murein transglycosylase A Protein Sequence Similarity - InterPro Domain: IPR026044
Reference: Escherichia coli K-12 MG1655
Jul 2018
Other
Person Approved EC number 3.2.1.- Published Annotation - Swiss-Prot Accession Number: P0A935 Feb 2006
Person Uncurated MultiFun 5.1 (cell processes; cell division) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.4 (location of gene products; outer membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.6.7 (metabolism; macromolecules (cellular constituent) biosynthesis; peptidoglycan (murein)) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 6.2 (cell structure; peptidoglycan (murein)) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref EcoGene:EG13085 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Person Approved db xref UniProtKB:P0A935 Published Annotation - Swiss-Prot Accession Number: P0A935 Jan 2006
Automated Process Approved db xref ASAP:ABE-0009228 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref GeneID:944964 Published Annotation - Entrez Gene Database ID: 944964
Reference: Escherichia coli K-12 MG1655
Jun 2009
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0A935 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref GI:1789179 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Person Approved function enzyme; Murein sacculus, peptidoglycan Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655
Oct 1998
Automated Process Approved note GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0009279 - cell outer membrane; GO_process: GO:0009252 - peptidoglycan biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved protein id AAC75855.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Uncurated subcellular localization Unknown Predicted by PSORTb - PSORTb Final_Score: 2.00
Reference: Escherichia coli K-12 MG1655
Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655
Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Gene Ontology
Person Uncurated GO biological process GO:0009252 peptidoglycan biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0009254 peptidoglycan turnover GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010611
Reference: Escherichia coli K-12 MG1655
Apr 2008
Person Uncurated GO cellular component GO:0009279 cell outer membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0019867 outer membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010611
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved GO molecular function GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005300
Reference: Escherichia coli K-12 MG1655
Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0001032 mltA CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000876 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001948 mltA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001691 mltA CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000182 mltA CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000860 mltA CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0000661 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0002713 CDS
Person Uncurated Go view Buchnera aphidicola APS ABZ-0129728 mltA CDS
Person Uncurated Go view Buchnera aphidicola Sg [T] ABV-0104572 mltA CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0003482 mltA CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0000446 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0003637 mltA CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0004371 mltA CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0008205 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0015922 mltA CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0000949 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0004862 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0304719 mltA CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0000836 mltA CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002836 mltA CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0009231 mltA CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0002825 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008337 mltA CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0002809 mltA CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0001475 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0006393 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0005874 mltA CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0010006 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0079539 mltA CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0003214 mltA CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0003726 mltA CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0010173 mltA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008939 mltA CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0003275 mltA CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0007555 mltA CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0004175 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007416 mltA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005936 mltA CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005413 mltA CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009133 mltA CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0008914 mltA CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0010230 mltA CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006714 mltA CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0010090 mltA CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006210 mltA CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0010187 mltA CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0009377 mltA CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008386 mltA CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0027802 mltA CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0006104 mltA CDS
Automated Process Approved Go view Escherichia coli HS ADR-0007635 mltA CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0002636 mltA CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0002883 mltA CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0003473 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0003619 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0003340 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0003132 mltA CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0177383 mltA CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0003130 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0002952 mltA CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0133711 mltA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0000970 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0003195 mltA CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0002955 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0004149 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0003173 mltA CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0001488 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0007935 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0002393 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0002614 mltA CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0002428 mltA CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0001577 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0003194 mltA CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0000961 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0010858 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0000848 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0291126 mltA CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0006244 mltA CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0061241 mltA CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002825 mltA CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0000245 mltA CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0001642 mltA CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0005554 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0138234 mltA CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0001052 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004904 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0003425 mltA CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0009225 mltA CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0008758 mltA CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0002881 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0002852 mltA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0003734 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0111703 mltA CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0084614 mltA CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0003608 mltA CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0099326 mltA CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0001873 CDS
Person Approved Go view Shigella boydii 227 ADV-0002972 mltA CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0008468 mltA CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007769 mltA CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0003464 mltA CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0074199 mltA CDS
Person Approved Go view Shigella flexneri 301 ABT-0089078 mltA CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0003086 mltA CDS
Person Approved Go view Shigella sonnei 046 ADD-0003246 mltA CDS
Person Uncurated Go view Trabulsiella guamensis ATCC 49490 [T] APH-0002738 mltA CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0002405 VC2312 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0007231 mltA CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0003556 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0009574 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003432 mltA CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002463 mltA CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000537 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0241113 mltA CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007346 mltA CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000611 mltA CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002335 mltA CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0118636 mltA CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0007368 mltA CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0000847 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0009234 mltA CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006434 mltA CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0032920 mltA CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005629 mltA CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0003581 mltA CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0002020 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006086 mltA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004945 mltA CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0003124 mltA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0003754 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0001226 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0007867 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0002277 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)

Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB22074mutantTn5 InsertionRequest the StrainABE-0009228mltAmltA::Tn5KAN-I-SceI at position 305 in Minus orientation ,+ pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2941081 to 2952178
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0009197rlmMCDScomplement29401432941243Downstream
ABE-0009199ygdDCDScomplement29412362941631Downstream
ABE-0009202gcvACDScomplement29416502942567Downstream
ABE-0047263gcvBncRNAforward29426962942901Downstream
ABE-0009214ygdICDScomplement29429182943145Downstream
ABE-0009218csdACDSforward29433372944542Downstream
ABE-0009220csdECDSforward29445422944985Downstream
ABE-0285550repeat_regionforward29449942945027Downstream
ABE-0009223tcdACDScomplement29450362945842Downstream
ABE-0285551repeat_regionforward29458962945992Downstream
ABE-0009228mltACDScomplement29460812947178Matches
ABE-0009232metZtRNAforward29473872947463Upstream
ABE-0009234metWtRNAforward29474972947573Upstream
ABE-0009236metVtRNAforward29476072947683Upstream
ABE-0009238amiCCDScomplement29477572949010Upstream
ABE-0009245argACDSforward29492422950573Upstream
ABE-0285552repeat_regionforward29506132950626Upstream
ABE-0009247recDCDScomplement29506352952461Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.