Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0009268 (thyA) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0009268 showshow history
Names
thyA JW2795 ECK2823 b2827
Product
thymidylate synthetase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 2964361 2965155 795 265
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0001039
EnteroFam0009268: Trusted threshold=813.4; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR000398 (IPR000398 Thymidylate synthase) Apr 2008
Automated Process Approved IPR023451 (IPR023451 Thymidylate synthase/dCMP hydroxymethylase domain) Jul 2018
Automated Process Approved IPR036926 (IPR036926 Thymidylate synthase/dCMP hydroxymethylase superfamily) Jul 2018
Automated Process Approved PF00303 (PF00303 Thymidylate synthase) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0015949 nucleobase-containing small molecule interconversion Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006231 dTMP biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000398
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0009257 10-formyltetrahydrofolate biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0004799 thymidylate synthase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000398
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name thyA Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym ECK2823 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW2795 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b2827 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product thymidylate synthetase Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name thymidylate synthetase Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0009268: Trusted threshold=813.4; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0001039
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family PF00303 Thymidylate synthase Protein Sequence Similarity - PFAM Model Name: PF00303
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR036926 Thymidylate synthase/dCMP hydroxymethylase superfamily Protein Sequence Similarity - InterPro Domain: IPR036926
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR023451 Thymidylate synthase/dCMP hydroxymethylase domain Protein Sequence Similarity - InterPro Domain: IPR023451
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR000398 Thymidylate synthase Protein Sequence Similarity - InterPro Domain: IPR000398
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Approved EC number 2.1.1.45 Published Annotation - Swiss-Prot Accession Number: P0A884 Feb 2006
Person Uncurated MultiFun 1.7.17 (metabolism; central intermediary metabolism; formyl-tetrahydrofolate biosynthesis) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.7.33 (metabolism; central intermediary metabolism; nucleotide and nucleoside conversions) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1789191 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:949035 Published Annotation - Entrez Gene Database ID: 949035
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0A884 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0009268 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG11002 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P0A884 Published Annotation - Swiss-Prot Accession Number: P0A884 Jan 2006
Person Approved function enzyme; 2'-Deoxyribonucleotide metabolism Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note GO_component: GO:0005737 - cytoplasm; GO_process: GO:0015949 - nucleobase, nucleoside and nucleotide interconversion Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC75866.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 9.97
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Uncurated GO biological process GO:0009257 10-formyltetrahydrofolate biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006231 dTMP biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000398
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0015949 nucleobase-containing small molecule interconversion Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0004799 thymidylate synthase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000398
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0001039 thyA CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000883 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000332 thyA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000330 thyA CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000505 thyA CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000496 thyA CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0000677 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0002725 CDS
Person Uncurated Go view Buchnera aphidicola APS ABZ-0129710 thyA CDS
Person Uncurated Go view Buchnera aphidicola Bp ABW-0105112 thyA CDS
Person Uncurated Go view Buchnera aphidicola Sg [T] ABV-0104554 thyA CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0003494 thyA CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0000433 thyA CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0003651 thyA CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0004394 thyA CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0008219 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0015912 thyA CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0000939 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0004852 thyA CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0304770 thyA CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0000822 thyA CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002857 thyA CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0002710 thyA CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0009245 thyA CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0002869 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008322 thyA CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0002849 thyA CDS
Automated Process Uncurated Go view Escherichia coli ATCC 11775 [T] AMC-0001432 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0006375 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0005838 thyA CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0009020 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0079580 thyA CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0003228 thyA CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0003745 thyA CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0010159 thyA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008904 thyA CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0003294 thyA CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0007583 thyA CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0004186 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007431 thyA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005950 thyA CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005428 thyA CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009147 thyA CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0008929 thyA CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0010215 thyA CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006730 thyA CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0010105 thyA CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006225 thyA CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0010202 thyA CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0009392 thyA CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008401 thyA CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0027816 thyA CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0006060 thyA CDS
Automated Process Approved Go view Escherichia coli HS ADR-0007650 thyA CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0003310 thyA CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0002647 thyA CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0002897 thyA CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0003460 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0003606 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0003327 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0003172 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0003144 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0002972 thyA CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0133725 thyA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0000982 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0003238 thyA CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0002966 thyA CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0004162 thyA CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0003245 thyA CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0001499 thyA CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0007951 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0002406 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0002627 thyA CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0002443 thyA CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0001563 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0003208 thyA CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0000946 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0010868 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0000055 CDS
Automated Process Approved Go view Pantoea stewartii DC283 ACV-0291140 thyA CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0006259 thyA CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0061225 thyA CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000549 thyA CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0000240 thyA CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0001627 thyA CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0005532 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0138177 thyA CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0005360 thyA CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0007315 thyA CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004891 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0003441 thyA CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007583 thyA CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0009267 thyA CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0008800 thyA CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006379 thyA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0007573 thyA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006535 thyA CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0005546 thyA CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005588 thyA CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006693 thyA CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0007586 thyA CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005481 thyA CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0002894 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0002865 thyA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0003748 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007744 thyA CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005472 thyA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007237 thyA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0005445 thyA CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0111731 thyA CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0084628 thyA CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0003622 thyA CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0099357 thyA CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006266 thyA CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0006614 thyA CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0007656 thyA CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0001861 thyA CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0264901 thyA CDS
Person Approved Go view Shigella boydii 227 ADV-0002997 thyA CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0008446 thyA CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007102 thyA CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0003477 thyA CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0074212 thyA CDS
Person Approved Go view Shigella flexneri 301 ABT-0256090 thyA CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0003099 thyA CDS
Person Approved Go view Shigella sonnei 046 ADD-0003260 thyA CDS
Person Uncurated Go view Wigglesworthia morsitans AEQ-0000490 thyA CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0007260 thyA CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000845 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0009608 thyA CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001771 thyA CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001285 thyA CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000548 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0241218 thyA CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007359 thyA CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000595 thyA CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0006871 thyA CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002555 thyA CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0117902 thyA CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006564 thyA CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0005063 thyA CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0002085 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0008374 thyA CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006450 thyA CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0032934 thyA CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0004497 thyA CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0003597 thyA CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0002040 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006102 thyA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004931 thyA CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0003139 thyA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0003772 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0001209 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0007826 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0002289 thyA CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2959361 to 2970155
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0009255recCCDScomplement29590602962428Downstream
ABE-0009257ppdCCDScomplement29624412962764Downstream
ABE-0009261ygdBCDScomplement29627492963156Downstream
ABE-0009263ppdBCDScomplement29631532963716Downstream
ABE-0009266ppdACDScomplement29637072964177Downstream
ABE-0009268thyACDScomplement29643612965155Matches
ABE-0009270lgtCDScomplement29651622966037Upstream
ABE-0009274ptsPCDScomplement29661882968434Upstream
ABE-0009276rppHCDScomplement29684472968977Upstream
ABE-0285273DARS2misc_featureforward29691082969558Upstream
ABE-0285274protein_bindforward29691352969143Upstream
ABE-0285275protein_bindcomplement29691492969157Upstream
ABE-0285276protein_bindcomplement29691612969169Upstream
ABE-0009287mutHCDSforward29696622970351Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.