Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0009300 (lplT) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0009300 showshow history
Names
lplT ygeD JW2803 ECK2831 b2835
Product
lysophospholipid transporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 2972669 2973862 1194 398
Sequence

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View sequence with flanking regions: bases upstream and bases downstream

Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0001045
EnteroFam0009300: Trusted threshold=992.5; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR011701 (IPR011701 Major facilitator superfamily) Apr 2008
Automated Process Approved IPR036259 (IPR036259 MFS transporter superfamily) Jul 2018
Automated Process Approved PF07690 (PF07690 Major Facilitator Superfamily) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0042493 response to drug Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0055085 transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR011701
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR011701
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Uncurated name lplT Published Annotation - PubMed ID: 15661733
Reference: Escherichia coli K-12 		Apr 2009
Person Approved synonym ECK2831 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW2803 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym ygeD Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved locus tag b2835 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product lysophospholipid transporter Experimental - PubMed ID: 15661733
Reference: Escherichia coli K-12 		Apr 2009
Person Uncurated alternate product name putative efflux protein, resistance protein Published Annotation - Database Name: GenProtEC Jan 2006
Person Approved alternate product name putative resistance proteins Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0009300: Trusted threshold=992.5; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0001045
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR011701 Major facilitator superfamily Protein Sequence Similarity - InterPro Domain: IPR011701
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR036259 MFS transporter superfamily Protein Sequence Similarity - InterPro Domain: IPR036259
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF07690 Major Facilitator Superfamily Protein Sequence Similarity - PFAM Model Name: PF07690
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Uncurated MultiFun 5.6.4 (cell processes; protection; drug resistance/sensitivity) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.9.B (transport; Transporters of Unknown Classification; Putative uncharacterized transport protein) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG12455 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1789200 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:947317 Published Annotation - Entrez Gene Database ID: 947317
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref ASAP:ABE-0009300 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P39196 Published Annotation - Swiss-Prot Accession Number: P39196 Jan 2005
Automated Process Approved db xref UniProtKB/Swiss-Prot:P39196 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function orf; Drug/analog sensitivity Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note putative resistance proteins; GO_process: GO:0042493 - response to drug Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC75874.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Uncurated GO biological process GO:0042493 response to drug Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0055085 transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR011701
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR011701
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0001045 lplT CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001742 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001561 lplT CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001366 lplT CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001366 lplT CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000986 lplT CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0003218 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0003854 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0003504 lplT CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0000425 CDS
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0003660 lplT CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0004402 lplT CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0005266 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0018487 lplT CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0003488 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0004844 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0304800 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0000811 lplT CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002865 CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0002702 lplT CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0009359 lplT CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0002877 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008313 lplT CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0002856 ygeD CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0001424 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0006366 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0005828 lplT CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006076 LplT CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0079588 ygeD CDS
Person Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0003237 lplT pseudogene
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0003754 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0010185 lplT CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007124 lplT CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0003303 lplT CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0007591 lplT CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0004194 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007441 lplT CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005959 lplT CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005437 lplT CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0005881 lplT CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0008938 lplT CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008302 lplT CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006738 lplT CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006234 lplT CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005545 lplT CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0010595 lplT CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005974 lplT CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0027825 ygeD CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0008358 lplT CDS
Automated Process Approved Go view Escherichia coli HS ADR-0007659 lplT CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0003318 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0002655 ygeD CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0002905 ygeD CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0003452 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0003598 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0003319 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0003180 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0177434 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0003152 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0002981 lplT CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0133733 ygeD CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0000990 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0003248 ygeD CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0002973 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0001503 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0003253 ygeD CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0001506 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0005246 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0003567 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0002164 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0003728 ygeD CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0004430 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0000511 ygeD CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0003778 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0010877 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0003994 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0289136 CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0007467 ygeD CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0063954 ygeD CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002135 CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0002603 CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000853 ygeD CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0008642 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0139573 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0007323 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004880 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0003449 ygeD CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007592 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0009296 ygeD CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0008830 ygeD CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006370 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0007581 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006543 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0005555 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005597 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006702 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0007595 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005472 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0002903 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0002873 ygeD CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0003760 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007752 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005464 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007246 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0005454 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0111751 ygeD CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0084636 ygeD CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0003639 ygeD CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0099381 ygeD CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006258 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0006606 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008145 CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0263733 CDS
Person Approved Go view Shigella boydii 227 ADV-0003005 ygeD CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0008438 lplT CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005481 lplT CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0003485 ygeD CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0074220 ygeD CDS
Person Approved Go view Shigella flexneri 301 ABT-0089097 ygeD CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0003107 ygeD CDS
Person Approved Go view Shigella sonnei 046 ADD-0003273 ygeD CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0002207 ygeD CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000853 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0009636 ygeD CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001764 lplT CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001277 ygeD CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000555 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0241190 ygeD CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007366 CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000587 ygeD CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0006863 CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002546 CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0117930 ygeD CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006572 CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0005056 CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003861 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006435 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006458 CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0032943 ygeD CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0004504 CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0003604 ygeD CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0002047 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006110 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004923 CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0003147 ygeD CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0003780 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0001201 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0007793 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0002298 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB22751mutantTn5 InsertionRequest the StrainABE-0009300lplTygeD::Tn5KAN-I-SceI at position 117 in Plus orientation ,+ pKD460Blattner Laboratory
FB23227mutantTn5 InsertionRequest the StrainABE-0009300lplTygeD::Tn5KAN-I-SceI at position 117 in Plus orientation ,- pKD465Tim Durfee (durf@genome.wisc.edu)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2967669 to 2978862
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0009274ptsPCDScomplement29661882968434Downstream
ABE-0009276rppHCDScomplement29684472968977Downstream
ABE-0285273DARS2misc_featureforward29691082969558Downstream
ABE-0285274protein_bindforward29691352969143Downstream
ABE-0285275protein_bindcomplement29691492969157Downstream
ABE-0285276protein_bindcomplement29691612969169Downstream
ABE-0009287mutHCDSforward29696622970351Downstream
ABE-0009290ygdQCDSforward29704202971133Downstream
ABE-0009293ygdRCDSforward29712712971489Downstream
ABE-0009298tasCDSforward29715972972637Downstream
ABE-0009300lplTCDScomplement29726692973862Matches
ABE-0009302aasCDScomplement29738552976014Overlaps Upstream
ABE-0047264omrAncRNAcomplement29761022976189Upstream
ABE-0047265omrBncRNAcomplement29763042976385Upstream
ABE-0009307galRCDSforward29765992977630Upstream
ABE-0009309lysACDScomplement29776372978899Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.