Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0009309 (lysA) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0009309 showshow history
Names
lysA JW2806 ECK2836 b2838
Product
diaminopimelate decarboxylase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 2977637 2978899 1263 421
Sequence

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0001047
EnteroFam0009309: Trusted threshold=1134.9; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR000183 (IPR000183 Ornithine/DAP/Arg decarboxylase) Apr 2008
Automated Process Approved IPR009006 (IPR009006 Alanine racemase/group IV decarboxylase, C-terminal) Apr 2008
Automated Process Approved IPR002986 (IPR002986 Diaminopimelate decarboxylase, LysA) Apr 2008
Automated Process Approved IPR022644 (IPR022644 Orn/DAP/Arg decarboxylase 2, N-terminal) Jul 2018
Automated Process Approved IPR022643 (IPR022643 Orn/DAP/Arg decarboxylase 2, C-terminal) Jul 2018
Automated Process Approved IPR029066 (IPR029066 PLP-binding barrel) Jul 2018
Automated Process Approved PF02784 (PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain) Jul 2018
Automated Process Approved PF00278 (PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0009089 lysine biosynthetic process via diaminopimelate GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002986
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO biological process GO:0009089 lysine biosynthetic process via diaminopimelate Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0008836 diaminopimelate decarboxylase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002986
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000183
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name lysA Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym ECK2836 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW2806 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b2838 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product diaminopimelate decarboxylase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Oct 2021
Person Uncurated alternate product name diaminopimelate decarboxylase, PLP-binding Published Annotation - Database Name: GenProtEC Jan 2006
Person Approved alternate product name diaminopimelate decarboxylase Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0009309: Trusted threshold=1134.9; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0001047
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR000183 Ornithine/DAP/Arg decarboxylase Protein Sequence Similarity - InterPro Domain: IPR000183
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR009006 Alanine racemase/group IV decarboxylase, C-terminal Protein Sequence Similarity - InterPro Domain: IPR009006
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR002986 Diaminopimelate decarboxylase, LysA Protein Sequence Similarity - InterPro Domain: IPR002986
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR029066 PLP-binding barrel Protein Sequence Similarity - InterPro Domain: IPR029066
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Protein Sequence Similarity - PFAM Model Name: PF02784
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain Protein Sequence Similarity - PFAM Model Name: PF00278
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR022643 Orn/DAP/Arg decarboxylase 2, C-terminal Protein Sequence Similarity - InterPro Domain: IPR022643
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR022644 Orn/DAP/Arg decarboxylase 2, N-terminal Protein Sequence Similarity - InterPro Domain: IPR022644
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Approved EC number 4.1.1.20 Published Annotation - Swiss-Prot Accession Number: P00861 Feb 2006
Person Uncurated MultiFun 1.5.1.7 (metabolism; building block biosynthesis; amino acids; lysine, diaminopimelate) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P00861 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1789203 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P00861 Published Annotation - Swiss-Prot Accession Number: P00861 Jan 2005
Automated Process Approved db xref ASAP:ABE-0009309 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:947313 Published Annotation - Entrez Gene Database ID: 947313
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref EcoGene:EG10549 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Amino acid biosynthesis: Lysine Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note diaminopimelate decarboxylase; GO_process: GO:0009089 - lysine biosynthetic process via diaminopimelate Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC75877.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 8.96
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0009089 lysine biosynthetic process via diaminopimelate GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002986
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO biological process GO:0009089 lysine biosynthetic process via diaminopimelate Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0008836 diaminopimelate decarboxylase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002986
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000183
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0001047 lysA CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001740 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000145 lysA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000447 lysA CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001365 lysA CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000344 lysA CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0003213 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0003849 CDS
Person Uncurated Go view Buchnera aphidicola APS ABZ-0129708 lysA CDS
Person Uncurated Go view Buchnera aphidicola Bp ABW-0105114 lysA CDS
Person Uncurated Go view Buchnera aphidicola Sg [T] ABV-0104552 lysA CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0003516 lysA CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0000420 lysA CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0003666 lysA CDS
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0004408 lysA CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0005247 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0018464 lysA CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0003499 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0004836 lysA CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0304889 lysA CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0000787 lysA CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002877 lysA CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0002696 lysA CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0009354 lysA CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0002880 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008308 lysA CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0002859 lysA CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0001421 lysA CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0006363 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0005823 lysA CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006081 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0079594 lysA CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0003241 lysA CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0003757 lysA CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0010190 lysA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007129 lysA CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0003308 lysA CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0007594 lysA CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007446 lysA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005964 lysA CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005442 lysA CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0005876 lysA CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0008943 lysA CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008307 lysA CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006743 lysA CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005728 lysA CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006239 lysA CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005550 lysA CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007660 lysA CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005979 lysA CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0027828 lysA CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0008363 lysA CDS
Automated Process Approved Go view Escherichia coli HS ADR-0007664 lysA CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0003321 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0002658 lysA CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0002910 lysA CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0003449 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0003595 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0003316 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0003183 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0177437 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0003155 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0002984 lysA CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0133736 lysA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0000993 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0003251 lysA CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0002979 lysA CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0001478 lysA CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0003261 lysA CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0001514 lysA CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0005230 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0002420 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0002642 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0002451 lysA CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0001555 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0003216 lysA CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0000938 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0010897 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0000069 CDS
Automated Process Approved Go view Pantoea stewartii DC283 ACV-0291148 lysA CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0006268 lysA CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0063967 lysA CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002123 lysA CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0000947 lysA CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000862 lysA CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0008669 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0139453 lysA CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0000210 lsyA-1 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0007330 lysA CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004873 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0003453 lysA CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007599 lysA CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0009311 lysA CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0008845 lysA CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006363 lysA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0007588 lysA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006550 lysA CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0005562 lysA CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005604 lysA CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006708 lysA CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0007602 lysA CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005465 lysA CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0002909 CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0002879 lysA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0003767 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007759 lysA CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005457 lysA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007253 lysA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0005461 lysA CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0111765 lysA CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0084641 lysA CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0003644 lysA CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0099393 lysA CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006251 lysA CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0006599 lysA CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008152 lysA CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0267957 lysA CDS
Person Approved Go view Shigella boydii 227 ADV-0003008 lysA CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0008434 lysA CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005485 lysA CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0003488 lysA CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0074223 lysA CDS
Person Approved Go view Shigella flexneri 301 ABT-0089100 lysA CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0003110 lysA CDS
Person Approved Go view Shigella sonnei 046 ADD-0003276 lysA CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0005441 lysA CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000857 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0009657 lysA CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001759 lysA CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001272 lysA CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000559 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0241186 lysA CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007371 lysA CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000583 lysA CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0006859 lysA CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002542 lysA CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0117954 lysA CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006576 lysA CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0005052 lysA CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003857 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006439 lysA CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006463 lysA CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0032947 lysA CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0004509 lysA CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0003609 lysA CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0002051 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006114 lysA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004918 lysA CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0003151 lysA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0003784 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0001197 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0007759 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0002303 lysA CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB22079mutantTn5 InsertionRequest the StrainABE-0009309lysAlysA::Tn5KAN-I-SceI at position 700 in Plus orientation ,+ pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2972637 to 2983899
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0009298tasCDSforward29715972972637Downstream
ABE-0009300lplTCDScomplement29726692973862Downstream
ABE-0009302aasCDScomplement29738552976014Downstream
ABE-0047264omrAncRNAcomplement29761022976189Downstream
ABE-0047265omrBncRNAcomplement29763042976385Downstream
ABE-0009307galRCDSforward29765992977630Downstream
ABE-0009309lysACDScomplement29776372978899Matches
ABE-0009313lysRCDSforward29790212979956Upstream
ABE-0009315ygeACDScomplement29799432980635Upstream
ABE-0285553repeat_regionforward29807332980755Upstream
ABE-0009319araECDScomplement29807642982182Upstream
ABE-0009330kduDCDScomplement29824972983258Upstream
ABE-0009332kduICDScomplement29832882984124Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.