Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0009330 (kduD) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0009330 showshow history
Names
kduD yqeD ygeC JW2810 ECK2840 b2842
Product
2-deoxy-D-gluconate 3-dehydrogenase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 2982497 2983258 762 254
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0001049
EnteroFam0009330: Trusted threshold=717.7; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR002198 (IPR002198 (DEPRECATED) Short-chain dehydrogenase/reductase SDR) Apr 2008
Automated Process Approved IPR002347 (IPR002347 Short-chain dehydrogenase/reductase SDR) Apr 2008
Automated Process Approved IPR011286 (IPR011286 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase) Apr 2008
Automated Process Approved IPR036291 (IPR036291 NAD(P)-binding domain superfamily) Jul 2018
Automated Process Approved PF13561 (PF13561 Enoyl-(Acyl carrier protein) reductase) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR011286
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002198
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0051287 NAD binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011286
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0008678 2-deoxy-D-gluconate 3-dehydrogenase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011286
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002198
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name kduD Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym ECK2840 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym yqeD Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved synonym ygeC Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved synonym JW2810 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b2842 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product 2-deoxy-D-gluconate 3-dehydrogenase Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved alternate product name putative 2-deoxy-D-gluconate 3-dehydrogenase; hexuronate utilization in high osmolarity Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved alternate product name 2-deoxy-D-gluconate 3-dehydrogenase Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0009330: Trusted threshold=717.7; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0001049
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR002347 Short-chain dehydrogenase/reductase SDR Protein Sequence Similarity - InterPro Domain: IPR002347
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR002198 (DEPRECATED) Short-chain dehydrogenase/reductase SDR Protein Sequence Similarity - InterPro Domain: IPR002198
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR011286 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase Protein Sequence Similarity - InterPro Domain: IPR011286
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR036291 NAD(P)-binding domain superfamily Protein Sequence Similarity - InterPro Domain: IPR036291
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF13561 Enoyl-(Acyl carrier protein) reductase Protein Sequence Similarity - PFAM Model Name: PF13561
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Approved EC number 1.1.1.125 Published Annotation - Swiss-Prot Accession Number: P37769 Feb 2006
Person Uncurated MultiFun 1.7.1 (metabolism; central intermediary metabolism; unassigned reversible reactions) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P37769 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:947323 Published Annotation - Entrez Gene Database ID: 947323
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P37769 Published Annotation - Swiss-Prot Accession Number: P37769 Jan 2005
Automated Process Approved db xref EcoGene:EG12361 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1789208 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0009330 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Central intermediary metabolism: Pool, multipurpose conversions Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved protein id AAC75881.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR011286
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002198
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0051287 NAD binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011286
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0008678 2-deoxy-D-gluconate 3-dehydrogenase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011286
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002198
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0001049 kduD CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001152 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002081 kduD CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000123 kduD CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000076 kduD CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000211 kduD CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0001184 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0002165 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0003527 kduD CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0003670 kduD_4 CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0004413 kduD_3 CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0006735 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0047127 kduD CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0002116 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0004826 kduD CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0009350 kduD CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0002884 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008304 kduD CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0002863 kduD CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0001417 kduD CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0006359 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0005819 kduD CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006085 CDS
Person Uncurated Go view Escherichia coli BL21(DE3) AHL-0005433 pseudogene
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0079598 kduD CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0003245 kduD CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0003761 kduD CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0010194 kduD CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007133 kduD CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0003314 kduD CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0007600 kduD CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0004201 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007450 kduD CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005968 kduD CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005446 kduD CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0005872 kduD CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0008947 kduD CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008311 kduD CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006747 kduD CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005732 kduD CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006244 kduD CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005554 kduD CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007664 kduD CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005983 kduD CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0027832 kduD CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0008368 kduD_2 CDS
Automated Process Approved Go view Escherichia coli HS ADR-0007668 kduD CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0003325 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0002662 kduD CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0002914 kduD CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0003445 kduD CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0003591 kduD CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0003312 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0003187 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0177441 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0003159 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0002988 kduD CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0133740 kduD CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0000998 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0003254 CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0002106 kduD CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0003091 kduD CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0003274 kduD CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0001524 kduD CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0006784 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0001048 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0004051 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0003819 kduD CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0004325 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0000609 kduD CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0003696 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0009392 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0002464 CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0004890 kduD CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0062666 kduD CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001426 kduD CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0000633 kduD CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0003265 kduD CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0006765 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0007335 kduD CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004868 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0003458 kduD CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007603 kduD CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0009330 kduD CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006359 kduD CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0007592 kduD CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006554 kduD CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0005566 kduD CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005608 kduD CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006712 kduD CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0007606 kduD CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005460 kduD CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0002913 CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0002883 kduD CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0003771 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007764 kduD CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005453 kduD CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007257 kduD CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0005465 kduD CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0111780 kduD CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0084645 kduD CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0003649 kduD CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0099410 kduD CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006246 kduD CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0006594 kduD CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008156 kduD CDS
Person Approved Go view Shigella boydii 227 ADV-0003012 kduD CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0008430 kduD CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005492 kduD CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0074227 kduD CDS
Person Approved Go view Shigella flexneri 301 ABT-0089104 kduD CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0003114 kduD CDS
Person Approved Go view Shigella sonnei 046 ADD-0003280 kduD CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000681 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0005563 kduD1 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000840 kduD CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000164 kduD CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001663 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0238517 kduD CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0006758 kduD1 CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002168 kduD CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0004943 kduD1 CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0001685 kduD CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0121035 kduD CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0004859 kduD1 CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0005624 kduD1 CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0002602 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0007743 kduD1 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0008078 kduD1 CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031582 kduD CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0008619 kduD1 CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0002295 kduD CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0002064 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006918 kduD1 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005660 kduD1 CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0002444 kduD CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0002897 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0002123 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0007742 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0002307 kduD CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB20959mutantTn5 InsertionRequest the StrainABE-0009330kduDkduD::Tn5KAN-I-SceI at position 335 in Minus orientation ,- pKD465Blattner Laboratory
FB20960mutantTn5 InsertionRequest the StrainABE-0009330kduDkduD::Tn5KAN-I-SceI at position 335 in Minus orientation ,+ pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2977497 to 2988258
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0009307galRCDSforward29765992977630Downstream
ABE-0009309lysACDScomplement29776372978899Downstream
ABE-0009313lysRCDSforward29790212979956Downstream
ABE-0009315ygeACDScomplement29799432980635Downstream
ABE-0285553repeat_regionforward29807332980755Downstream
ABE-0009319araECDScomplement29807642982182Downstream
ABE-0009330kduDCDScomplement29824972983258Matches
ABE-0009332kduICDScomplement29832882984124Upstream
ABE-0009335yqeFCDScomplement29844112985592Upstream
ABE-0009345yqeGCDSforward29858472987076Upstream
ABE-0009349yqeHCDSforward29875362988168Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.