Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0009438 (yqeA) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0009438 showshow history
Names
yqeA JW2842 ECK2870 b2874
Product
putative amino acid kinase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 3011461 3012393 933 311
Sequence

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View sequence with flanking regions: bases upstream and bases downstream

Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR001048 (IPR001048 Aspartate/glutamate/uridylate kinase) Apr 2008
Automated Process Approved IPR003964 (IPR003964 Carbamate kinase) Apr 2008
Automated Process Approved IPR036393 (IPR036393 Acetylglutamate kinase-like superfamily) Jul 2018
Automated Process Approved PF00696 (PF00696 Amino acid kinase family) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0008652 cellular amino acid biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001048
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006525 arginine metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003964
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0008804 carbamate kinase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003964
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name yqeA Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym ECK2870 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW2842 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b2874 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product putative amino acid kinase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Oct 2021
Person Approved alternate product name putative kinase Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Uncurated alternate product name putative carbamate kinase Published Annotation - Database Name: GenProtEC Jan 2006
Protein Family
Automated Process Approved protein family IPR036393 Acetylglutamate kinase-like superfamily Protein Sequence Similarity - InterPro Domain: IPR036393
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR003964 Carbamate kinase Protein Sequence Similarity - InterPro Domain: IPR003964
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR001048 Aspartate/glutamate/uridylate kinase Protein Sequence Similarity - InterPro Domain: IPR001048
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF00696 Amino acid kinase family Protein Sequence Similarity - PFAM Model Name: PF00696
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Approved EC number 2.7.2.2 Protein Sequence Similarity - InterPro Domain: IPR003964
Reference: Escherichia coli K-12 MG1655 		Dec 2008
Person Uncurated MultiFun 1.7.1 (metabolism; central intermediary metabolism; unassigned reversible reactions) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:Q46807 Published Annotation - Swiss-Prot Accession Number: Q46807 Jan 2006
Automated Process Approved db xref GeneID:947358 Published Annotation - Entrez Gene Database ID: 947358
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref GI:1789238 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0009438 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG13057 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function putative enzyme; Not classified Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note putative kinase Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC75912.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 8.96
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0008652 cellular amino acid biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001048
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006525 arginine metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003964
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0008804 carbamate kinase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003964
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0005506 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0003914 yqeA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0004158 yqeA CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0007311 yqeA CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0003485 yqeA CDS
Ortholog
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0003756 arcC_2 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005973 CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0002898 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008270 CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0002875 yqeA CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0001404 yqeA CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0006315 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0005777 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006144 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0079612 yqeA CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0003297 CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0003807 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0010821 CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007169 CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0003328 yqeA CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0007635 CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0004245 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007501 CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006021 CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005498 CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0005819 CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0009000 CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008363 CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006802 CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005786 CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006297 CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005608 CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007719 CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006037 CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0027885 yqeA CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0008382 arcC1_2 CDS
Automated Process Approved Go view Escherichia coli HS ADR-0007713 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0002693 yqeA CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0002946 yqeA CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0003401 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0003542 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0003269 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0003201 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0177454 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0003199 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0003005 CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0133789 yqeA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001042 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0003268 yqeA CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0000025 yqeA CDS
Person Approved Go view Shigella boydii 227 ADV-0003405 yqeA CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005507 CDS
Person Approved Go view Shigella sonnei 046 ADD-0003305 yqeA CDS
Person Uncurated Go view Trabulsiella guamensis ATCC 49490 [T] APH-0004615 yqeA CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0001583 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0000316 yqeA CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB22752mutantTn5 InsertionRequest the StrainABE-0009438yqeAyqeA::Tn5KAN-I-SceI at position 534 in Plus orientation ,+ pKD460Blattner Laboratory
FB23236mutantTn5 InsertionRequest the StrainABE-0009438yqeAyqeA::Tn5KAN-I-SceI at position 534 in Plus orientation ,- pKD465Tim Durfee (durf@genome.wisc.edu)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3006461 to 3017393
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0009425ygeWCDSforward30062623007452Upstream
ABE-0009428ygeXCDSforward30075103008706Upstream
ABE-0009434ygeYCDSforward30087643009975Upstream
ABE-0009436hyuACDSforward30100283011413Upstream
ABE-0009438yqeACDSforward30114613012393Matches
ABE-0285555repeat_regionforward30124013012604Downstream
ABE-0009441yqeBCDScomplement30126143014239Downstream
ABE-0009443yqeCCDScomplement30142873015057Downstream
ABE-0009447mocACDSforward30151603015738Downstream
ABE-0009450ygfKCDSforward30160603019158Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.