Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0009447 (mocA) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0009447 showshow history
Names
mocA JW2845 ECK2873 ygfJ b2877
Product
CTP:molybdopterin cytidylyltransferase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 3015160 3015738 579 193
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR025877 (IPR025877 MobA-like NTP transferase) Jul 2018
Automated Process Approved IPR017696 (IPR017696 Molybdenum cofactor cytidylyltransferase) Jul 2018
Automated Process Approved IPR029044 (IPR029044 Nucleotide-diphospho-sugar transferases) Jul 2018
Automated Process Approved PF12804 (PF12804 MobA-like NTP transferase domain) Jul 2018
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name mocA Published Annotation - PubMed ID: 19542235
Reference: Escherichia coli K-12 		Jan 2010
Person Approved synonym JW2845 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ygfJ Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym ECK2873 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b2877 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product CTP:molybdopterin cytidylyltransferase Experimental - PubMed ID: 19542235
Reference: Escherichia coli K-12 		Jan 2010
Protein Family
Automated Process Approved protein family IPR025877 MobA-like NTP transferase Protein Sequence Similarity - InterPro Domain: IPR025877
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR017696 Molybdenum cofactor cytidylyltransferase Protein Sequence Similarity - InterPro Domain: IPR017696
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR029044 Nucleotide-diphospho-sugar transferases Protein Sequence Similarity - InterPro Domain: IPR029044
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF12804 MobA-like NTP transferase domain Protein Sequence Similarity - PFAM Model Name: PF12804
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0009447 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1789242 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:947356 Published Annotation - Entrez Gene Database ID: 947356
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:Q46810 Published Annotation - Swiss-Prot Accession Number: Q46810 Jan 2006
Automated Process Approved db xref EcoGene:EG13060 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function converts Mo-molybdopterin (Mo-MPT) cofactor (Moco) to the molybdopterin cytosine dinucleotide (MCD) cofactor (a Moco form) Experimental - PubMed ID: 19542235
Reference: Escherichia coli K-12 		Jan 2010
Automated Process Approved protein id AAC75915.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Unknown Predicted by PSORTb - PSORTb Final_Score: 2.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0004776 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0003873 mocA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0004159 mocA CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0009249 mocA CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0003486 mocA CDS
Ortholog
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005970 CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0002901 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008267 CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0002878 ygfJ CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0001401 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0006312 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0005774 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006147 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0079615 mocA CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0003300 CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0003810 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009162 CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007172 CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0003331 ygfJ CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0007638 CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0004248 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007504 CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006024 CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005501 CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0005816 CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0009003 CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008366 CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006805 CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005789 CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006300 CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005611 CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007722 CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006040 CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0027888 ygfJ CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0008385 mocA CDS
Automated Process Approved Go view Escherichia coli HS ADR-0007716 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0002696 ygfJ CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0002949 ygfJ CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0003398 mocA CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0003539 mocA CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0003266 mocA CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0003204 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0177457 CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0003202 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0003008 CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0133792 ygfJ CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001045 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0003271 ygfJ CDS
Person Approved Go view Shigella boydii 227 ADV-0003402 ygfJ CDS
Person Approved Go view Shigella sonnei 046 ADD-0003308 ygfJ CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3010160 to 3020738
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0009436hyuACDSforward30100283011413Upstream
ABE-0009438yqeACDSforward30114613012393Upstream
ABE-0285555repeat_regionforward30124013012604Upstream
ABE-0009441yqeBCDScomplement30126143014239Upstream
ABE-0009443yqeCCDScomplement30142873015057Upstream
ABE-0009447mocACDSforward30151603015738Matches
ABE-0009450ygfKCDSforward30160603019158Downstream
ABE-0009452ssnACDSforward30191613020489Downstream
ABE-0009456ygfMCDSforward30205403021319Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.