Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0009463 (xanQ) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0009463 showshow history
Names
xanQ JW2850 ECK2878 ygfO b2882
Product
xanthine permease
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 3024351 3025751 1401 467
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR006042 (IPR006042 Xanthine/uracil permease) Apr 2008
Automated Process Approved IPR006043 (IPR006043 Xanthine/uracil/vitamin C permease) Apr 2008
Automated Process Approved PF00860 (PF00860 Permease family) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006042
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO biological process GO:0055085 transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR006043, IPR006042
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006042
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0022857 transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR006043
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006042
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Uncurated name xanQ Published Annotation in EcoGene - EG Number: EG13065
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Approved synonym ECK2878 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW2850 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ygfO Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved locus tag b2882 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product xanthine permease Experimental - PubMed ID: 16096267
Reference: Escherichia coli K-12 		Mar 2009
Person Uncurated alternate product name putative transport protein (NCS2 family) Published Annotation - Database Name: GenProtEC Jan 2006
Person Uncurated alternate product name probable guanine/xanthin permease Published Annotation - Swiss-Prot Accession Number: Q46815 Jan 2006
Protein Family
Automated Process Approved protein family IPR006043 Xanthine/uracil/vitamin C permease Protein Sequence Similarity - InterPro Domain: IPR006043
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF00860 Permease family Protein Sequence Similarity - PFAM Model Name: PF00860
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR006042 Xanthine/uracil permease Protein Sequence Similarity - InterPro Domain: IPR006042
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Uncurated MultiFun 4.2.A.40 (transport; Electrochemical potential driven transporters; Porters (Uni-, Sym- and Antiporters); The Nucleobase:Cation Symporter-2 (NCS2) Family) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG13065 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0009463 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P67444 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P67444 Published Annotation - Swiss-Prot Accession Number: P67444 Jan 2006
Automated Process Approved db xref GeneID:949075 Published Annotation - Entrez Gene Database ID: 949075
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref GI:87082178 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved function transport; Transport of small molecules: Nucleosides, purines, pyrimidines Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved note GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0005737 - cytoplasm Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC75920.2 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006042
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO biological process GO:0055085 transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR006043, IPR006042
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006042
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006042
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0022857 transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR006043
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0004170 xanQ CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0004448 xanQ CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0008238 xanQ CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0003595 xanQ CDS
Ortholog
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0003764 xanQ CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0002906 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008262 CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0002883 ygfO CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0001396 xanQ CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0006307 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0005769 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006152 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0079620 xanQ CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0003307 pbuX CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009167 CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007177 CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0003338 ygfO CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0007644 CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0004253 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007509 CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006029 CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005506 CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0005811 CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0009008 CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008371 CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006810 CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005794 CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006305 CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005616 CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007727 CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006045 CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0027893 ygfO CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0008390 xanQ CDS
Automated Process Approved Go view Escherichia coli HS ADR-0007721 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0002701 ygfO CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0002954 ygfO CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0003393 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0003534 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0003261 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0003209 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0177462 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0003207 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0003013 CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0133797 ygfO CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001050 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0003276 ygfO CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0000033 xanQ CDS
Person Uncurated Go view Trabulsiella guamensis ATCC 49490 [T] APH-0004607 xanQ CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0001549 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0000324 xanQ CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3019351 to 3030751
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0009452ssnACDSforward30191613020489Upstream
ABE-0009456ygfMCDSforward30205403021319Upstream
ABE-0009459xdhDCDSforward30213163024186Upstream
ABE-0009463xanQCDSforward30243513025751Matches
ABE-0009465guaDCDSforward30257663027085Downstream
ABE-0174113ghxQCDSforward30271213028488Downstream
ABE-0009471ygfSCDScomplement30285243029012Downstream
ABE-0009473ygfTCDScomplement30290123030931Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.