Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0009494 (dsbC) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0009494 showshow history
Names
dsbC JW2861 ECK2888 xprA b2893
Product
protein disulfide isomerase II
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 3038112 3038822 711 237
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0001052
EnteroFam0009494: Trusted threshold=599.4; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR009094 (IPR009094 Disulphide bond isomerase DsbC/G, N-terminal domain superfamily) Apr 2008
Automated Process Approved IPR012335 (IPR012335 (DEPRECATED) Thioredoxin fold) Apr 2008
Automated Process Approved IPR006662 (IPR006662 (DEPRECATED) Thioredoxin-like subdomain) Apr 2008
Automated Process Approved IPR014679 (IPR014679 (DEPRECATED) Thiol:disulphide interchange DsbC) Apr 2008
Automated Process Approved IPR012336 (IPR012336 Thioredoxin-like fold) Apr 2008
Automated Process Approved IPR018950 (IPR018950 Disulphide bond isomerase, DsbC/G, N-terminal) Jul 2018
Automated Process Approved IPR036249 (IPR036249 Thioredoxin-like superfamily) Jul 2018
Automated Process Approved PF10411 (PF10411 Disulfide bond isomerase protein N-terminus) Jul 2018
Automated Process Approved PF13098 (PF13098 Thioredoxin-like domain) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0006457 protein folding Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0045454 cell redox homeostasis GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006662
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0030288 outer membrane-bounded periplasmic space GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Approved GO cellular component GO:0042597 periplasmic space Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name dsbC Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym xprA Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved synonym JW2861 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK2888 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b2893 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product protein disulfide isomerase II Published Annotation - PubMed ID: 16397293 Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0009494: Trusted threshold=599.4; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0001052
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR006662 (DEPRECATED) Thioredoxin-like subdomain Protein Sequence Similarity - InterPro Domain: IPR006662
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR012335 (DEPRECATED) Thioredoxin fold Protein Sequence Similarity - InterPro Domain: IPR012335
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR009094 Disulphide bond isomerase DsbC/G, N-terminal domain superfamily Protein Sequence Similarity - InterPro Domain: IPR009094
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR036249 Thioredoxin-like superfamily Protein Sequence Similarity - InterPro Domain: IPR036249
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR014679 (DEPRECATED) Thiol:disulphide interchange DsbC Protein Sequence Similarity - InterPro Domain: IPR014679
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF13098 Thioredoxin-like domain Protein Sequence Similarity - PFAM Model Name: PF13098
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF10411 Disulfide bond isomerase protein N-terminus Protein Sequence Similarity - PFAM Model Name: PF10411
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR012336 Thioredoxin-like fold Protein Sequence Similarity - InterPro Domain: IPR012336
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR018950 Disulphide bond isomerase, DsbC/G, N-terminal Protein Sequence Similarity - InterPro Domain: IPR018950
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Approved EC number 5.3.4.1 Published Annotation - Database Name: GenProtEC
Reference: Escherichia coli K-12 MG1655 		Jan 2007
Person Uncurated MultiFun 7.2 (location of gene products; periplasmic space) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 2.3.4 (information transfer; protein related; chaperoning, folding) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0AEG6 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1789260 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P0AEG6 Published Annotation - Swiss-Prot Accession Number: P0AEG6 Jan 2006
Automated Process Approved db xref ASAP:ABE-0009494 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:947363 Published Annotation - Entrez Gene Database ID: 947363
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref EcoGene:EG11070 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Surface structures Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note GO_component: GO:0042597 - periplasmic space; GO_process: GO:0006457 - protein folding Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC75931.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Periplasmic Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model the E-matrix Experimental - PubMed ID: 19282977
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0045454 cell redox homeostasis GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006662
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0006457 protein folding Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0030288 outer membrane-bounded periplasmic space GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Approved GO cellular component GO:0042597 periplasmic space Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0001052 dsbC CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000926 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000652 dsbC CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000705 dsbC CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001105 dsbC CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000797 dsbC CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0002951 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0002935 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0003585 dsbC CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0000357 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0003773 dsbC CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0004492 dsbC CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0008500 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0018053 dsbC CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0000675 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0004792 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0304918 dsbC CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0000776 dsbC CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002885 dsbC CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0002674 dsbC CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005952 dsbC CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0002916 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008251 dsbC CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0002893 dsbC CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0001384 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0006296 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0005757 dsbC CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006164 DsbC CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0079634 dsbC CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0003319 dsbC CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0003829 dsbC CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009179 dsbC CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007189 dsbC CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0003349 dsbC CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0007655 dsbC CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0004264 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007521 dsbC CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006041 dsbC CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005518 dsbC CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0005799 dsbC CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0009020 dsbC CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008383 dsbC CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006822 dsbC CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005805 dsbC CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006317 dsbC CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005628 dsbC CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007738 dsbC CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006057 dsbC CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0027903 dsbC CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0008401 dsbC CDS
Automated Process Approved Go view Escherichia coli HS ADR-0007731 dsbC CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0003374 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0002709 dsbC CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0002964 dsbC CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0003381 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0003522 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0003249 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0003219 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0177475 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0003217 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0003024 dsbC CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0133807 dsbC CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001061 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0003287 dsbC CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0003025 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0001454 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0003330 dsbC CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0001543 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0008286 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0002428 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0002651 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0002459 dsbC CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0001547 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0003224 dsbC CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0000930 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0010911 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0000077 CDS
Automated Process Approved Go view Pantoea stewartii DC283 ACV-0291160 dsbC CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0006276 dsbC CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0061006 dsbC CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000382 dsbC CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0001382 dsbC CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0001187 dsbC CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0005216 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0144922 dsbC CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0001509 dsbC CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0007366 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004836 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0003488 dsbC CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007633 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0009415 dsbC CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0008904 dsbC CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006329 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0007633 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006594 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0005594 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005637 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0007635 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005430 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0002940 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0002911 dsbC CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0003805 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007795 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005424 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007283 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0005491 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0111843 dsbC CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0084679 dsbC CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0003681 dsbC CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0099479 dsbC CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006220 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0009195 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008185 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0001835 CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0264506 dsbC CDS
Person Approved Go view Shigella boydii 227 ADV-0003393 dsbC CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0008725 dsbC CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003944 dsbC CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0003633 dsbC CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0074254 dsbC CDS
Person Approved Go view Shigella flexneri 301 ABT-0089131 dsbC CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0003138 dsbC CDS
Person Approved Go view Shigella sonnei 046 ADD-0003329 dsbC CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0002511 VC2418 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0001992 dsbC CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000883 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0009782 dsbC CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001732 dsbC CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001242 dsbC CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000578 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0242949 dsbC CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007972 dsbC CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000468 dsbC CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0006757 dsbC CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002456 dsbC CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0118229 dsbC CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006675 dsbC CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0004952 dsbC CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003102 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006536 dsbC CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006561 dsbC CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0033042 dsbC CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0004609 dsbC CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0003718 dsbC CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0000739 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006210 dsbC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004825 dsbC CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0003273 dsbC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0003936 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0001075 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0007627 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0002381 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3033112 to 3043822
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0009484idiCDSforward30330653033613Downstream
ABE-0009486lysSCDScomplement30336573035174Downstream
ABE-0009488prfBCDScomplement30351843036206(Interval #2) Downstream
ABE-0009488prfBCDScomplement30362083036282(Interval #1) Downstream
ABE-0009492recJCDScomplement30363733038106Downstream
ABE-0009494dsbCCDScomplement30381123038822Matches
ABE-0009500xerDCDScomplement30388473039743Upstream
ABE-0009503fldBCDSforward30398553040376Upstream
ABE-0009505ygfXCDScomplement30404163040823Upstream
ABE-0009507sdhECDScomplement30408043041070Upstream
ABE-0009512ygfZCDSforward30413133042293Upstream
ABE-0285556repeat_regionforward30423213042475Upstream
ABE-0009515yqfACDScomplement30424893043148Upstream
ABE-0009518yqfBCDScomplement30433123043623Upstream
ABE-0009523bglACDSforward30436623045101Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.