Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0009503 (fldB) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0009503 showshow history
Names
fldB JW2863 ECK2890 b2895
Product
flavodoxin 2
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 3039855 3040376 522 174
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0001054
EnteroFam0009503: Trusted threshold=470.7; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR001226 (IPR001226 Flavodoxin, conserved site) Apr 2008
Automated Process Approved IPR014357 (IPR014357 (DEPRECATED) Flavodoxin) Apr 2008
Automated Process Approved IPR008254 (IPR008254 Flavodoxin/nitric oxide synthase) Apr 2008
Automated Process Approved IPR010086 (IPR010086 Flavodoxin, long chain) Apr 2008
Automated Process Approved IPR029039 (IPR029039 Flavoprotein-like superfamily) Jul 2018
Automated Process Approved PF00258 (PF00258 Flavodoxin) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0009060 aerobic respiration Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006118 (OBSOLETE) electron transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001226
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008254
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO molecular function GO:0009055 electron transfer activity Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0010181 FMN binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001226
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name fldB Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym ECK2890 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW2863 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b2895 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product flavodoxin 2 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name flavodoxin 2 Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0009503: Trusted threshold=470.7; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0001054
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR001226 Flavodoxin, conserved site Protein Sequence Similarity - InterPro Domain: IPR001226
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR014357 (DEPRECATED) Flavodoxin Protein Sequence Similarity - InterPro Domain: IPR014357
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR029039 Flavoprotein-like superfamily Protein Sequence Similarity - InterPro Domain: IPR029039
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR010086 Flavodoxin, long chain Protein Sequence Similarity - InterPro Domain: IPR010086
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR008254 Flavodoxin/nitric oxide synthase Protein Sequence Similarity - InterPro Domain: IPR008254
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF00258 Flavodoxin Protein Sequence Similarity - PFAM Model Name: PF00258
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Uncurated MultiFun 1.3.6 (metabolism; energy metabolism, carbon; aerobic respiration) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.4.3 (metabolism; energy production/transport; electron carrier) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.5.3.9 (metabolism; building block biosynthesis; cofactor, small molecule carrier; riboflavin (Vitamin B2), FAD, FMN) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:947361 Published Annotation - Entrez Gene Database ID: 947361
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P0ABY4 Published Annotation - Swiss-Prot Accession Number: P0ABY4 Jan 2006
Automated Process Approved db xref GI:1789262 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0ABY4 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0009503 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG12697 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Energy metabolism, carbon: Aerobic respiration Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note GO_function: GO:0009055 - electron carrier activity; GO_process: GO:0009060 - aerobic respiration Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC75933.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Unknown Predicted by PSORTb - PSORTb Final_Score: 2.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0006118 (OBSOLETE) electron transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001226
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0009060 aerobic respiration Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008254
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO molecular function GO:0009055 electron transfer activity Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0010181 FMN binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001226
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0001054 fldB CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000928 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000887 fldB CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001106 fldB CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001350 fldB CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001226 fldB CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0002948 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0002938 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0003587 CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0000355 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0003775 isiB CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0004494 isiB CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0008504 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0018057 fldB CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0000672 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0004790 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0304930 fldB CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0000772 fldB CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002888 fldB CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0002676 fldB CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005950 fldB CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0002918 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008249 CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0002895 fldB CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0001382 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0006294 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0005755 fldB CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006166 FldB CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0079636 fldB CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0003321 CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0003831 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009181 fldB CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007191 fldB CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0003351 fldB CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0007657 fldB CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0004266 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007523 fldB CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006043 fldB CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005520 fldB CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0005797 fldB CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0009022 fldB CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008385 fldB CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006824 fldB CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005807 fldB CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006319 fldB CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005630 fldB CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007740 fldB CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006059 fldB CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0027905 fldB CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0008403 fldB CDS
Automated Process Approved Go view Escherichia coli HS ADR-0007733 fldB CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0003376 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0002711 fldB CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0002966 fldB CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0003379 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0003520 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0003247 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0003221 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0177477 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0003219 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0003026 fldB CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0133809 fldB CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001063 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0003289 fldB CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0003027 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0001452 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0003332 fldB CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0001545 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0008291 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0002430 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0002697 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0002461 fldB CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0001545 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0003273 fldB CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0000928 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0010913 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0000079 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0291162 fldB CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0006278 fldB CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0060998 fldB CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000412 fldB CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0000199 fldB CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0001181 fldB CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0005212 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0144927 fldB CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0007368 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004834 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0003490 fldB CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007635 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0009421 fldB CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0008910 fldB CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006327 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0007635 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006596 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0005596 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005639 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0007637 fldB CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005428 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0002942 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0002913 fldB CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0003807 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007797 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005422 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007285 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0005493 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0111847 fldB CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0084681 fldB CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0003683 fldB CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0099487 fldB CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006218 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0009193 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008187 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0001833 CDS
Person Approved Go view Shigella boydii 227 ADV-0003391 fldB CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0008727 fldB CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003942 fldB CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0003631 fldB CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0074256 fldB CDS
Person Approved Go view Shigella flexneri 301 ABT-0089133 fldB CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0003140 fldB CDS
Person Approved Go view Shigella sonnei 046 ADD-0003331 fldB CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0002513 VC2420 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0001988 fldB CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000885 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0009789 fldB CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001730 isiB CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001240 fldB CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000580 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0242952 fldB CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007970 fldB CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000466 fldB CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0006755 fldB CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002454 fldB CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0118233 fldB CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006677 fldB CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0004950 fldB CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003481 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006538 fldB CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006563 fldB CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0033044 fldB CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0004611 fldB CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0003721 fldB CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0000737 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006212 fldB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004823 fldB CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0003275 fldB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0003939 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0001034 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0007620 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0002383 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB20965mutantTn5 InsertionRequest the StrainABE-0009503fldBfldB::Tn5KAN-I-SceI at position 311 in Plus orientation ,- pKD465Blattner Laboratory
FB20966mutantTn5 InsertionRequest the StrainABE-0009503fldBfldB::Tn5KAN-I-SceI at position 311 in Plus orientation ,+ pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3034855 to 3045376
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0009486lysSCDScomplement30336573035174Upstream
ABE-0009488prfBCDScomplement30351843036206(Interval #2) Upstream
ABE-0009488prfBCDScomplement30362083036282(Interval #1) Upstream
ABE-0009492recJCDScomplement30363733038106Upstream
ABE-0009494dsbCCDScomplement30381123038822Upstream
ABE-0009500xerDCDScomplement30388473039743Upstream
ABE-0009503fldBCDSforward30398553040376Matches
ABE-0009505ygfXCDScomplement30404163040823Downstream
ABE-0009507sdhECDScomplement30408043041070Downstream
ABE-0009512ygfZCDSforward30413133042293Downstream
ABE-0285556repeat_regionforward30423213042475Downstream
ABE-0009515yqfACDScomplement30424893043148Downstream
ABE-0009518yqfBCDScomplement30433123043623Downstream
ABE-0009523bglACDSforward30436623045101Downstream
ABE-0285557repeat_regionforward30451133045140Downstream
ABE-0009526ygfFCDScomplement30451583045901Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.