Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0009523 (bglA) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0009523 showshow history
Names
bglA yqfC JW2869 ECK2896 bglD b2901
Product
6-phospho-beta-glucosidase A
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 3043662 3045101 1440 480
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR001360 (IPR001360 Glycoside hydrolase family 1) Apr 2008
Automated Process Approved IPR013781 (IPR013781 (DEPRECATED) Glycoside hydrolase, catalytic domain) Apr 2008
Automated Process Approved IPR017853 (IPR017853 Glycoside hydrolase superfamily) Jul 2018
Automated Process Approved PF00232 (PF00232 Glycosyl hydrolase family 1) Jul 2018
Automated Process Uncurated GH1 (GH1 Glycoside Hydrolase Family 1) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0005975 carbohydrate metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001360
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0043169 cation binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013781
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013781
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001360
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name bglA Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym ECK2896 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym yqfC Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved synonym JW2869 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym bglD Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved locus tag b2901 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product 6-phospho-beta-glucosidase A Published Annotation - PubMed ID: 16397293 Jan 2006
Person Uncurated alternate product name 6-phospho-beta-glucosidase A Published Annotation - Database Name: GenProtEC Jan 2006
Person Approved alternate product name 6-phospho-beta-glucosidase A; cryptic Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Automated Process Uncurated protein family GH1 Glycoside Hydrolase Family 1 Protein Sequence Similarity - CAZy Model Name: GH1
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF00232 Glycosyl hydrolase family 1 Protein Sequence Similarity - PFAM Model Name: PF00232
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR013781 (DEPRECATED) Glycoside hydrolase, catalytic domain Protein Sequence Similarity - InterPro Domain: IPR013781
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR017853 Glycoside hydrolase superfamily Protein Sequence Similarity - InterPro Domain: IPR017853
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR001360 Glycoside hydrolase family 1 Protein Sequence Similarity - InterPro Domain: IPR001360
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Automated Process Uncurated EC number 3.2.1.- Published Annotation - Database Name: EC2GO: GO:0004553
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Approved EC number 3.2.1.86 Published Annotation - Swiss-Prot Accession Number: Q46829 Feb 2006
Person Uncurated MultiFun 1.1.1 (metabolism; carbon utilization; carbon compounds) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:Q46829 Published Annotation - Swiss-Prot Accession Number: Q46829 Jan 2006
Automated Process Approved db xref GI:2367174 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG13079 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:947378 Published Annotation - Entrez Gene Database ID: 947378
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref ASAP:ABE-0009523 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Degradation of small molecules: Carbon compounds Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note 6-phospho-beta-glucosidase A; cryptic; GO_process: GO:0016052 - carbohydrate catabolic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC75939.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 9.97
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0005975 carbohydrate metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001360
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0043169 cation binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013781
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013781
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001360
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001816 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001851 bglA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000114 bglA CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000015 ascB CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000076 bglA CDS
Ortholog
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0000783 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0003593 CDS
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0003782 celA_2 CDS
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0004501 celA_2 CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0008855 CDS
Person Uncurated Go view Dickeya dadantii 3937 ABF-0016574 bglA CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0000390 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0305392 bglA CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0000579 bglA CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000515 bglA CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0002683 bglA CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005944 bglA CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0002925 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008242 CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0002901 bglA CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0001376 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0006288 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0005747 bglA CDS
Person Uncurated Go view Escherichia coli B7A (ETEC) ADK-0011091 pseudogene
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0079643 bglA CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0003327 CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0003839 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009188 bglA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007199 bglA CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0003357 bglA CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0007664 bglA CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0004274 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007530 bglA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006050 bglA CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005527 bglA CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0005790 bglA CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0009029 bglA CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008392 bglA CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006831 bglA CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005814 bglA CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006326 bglA CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005637 bglA CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007747 bglA CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006066 bglA CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0027911 bglA CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0008410 bglA_2 CDS
Automated Process Approved Go view Escherichia coli HS ADR-0007739 bglA CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0003382 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0002717 bglA CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0002972 bglA CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0003373 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0003514 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0003241 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0003228 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0177484 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0003225 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0003032 bglA CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0133815 CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001070 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0003296 bglA CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0000044 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0008610 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0002436 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0002704 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0002467 bglA CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0001539 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0003279 bglA CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0000922 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0006492 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0000084 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0291169 bglA CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0006284 bglA CDS
Person Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0064770 bglA CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002610 bglA CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0004053 bglA CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000812 bglA CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0004440 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0007375 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004828 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0003497 bglA CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007642 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0009435 bglA CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0008924 bglA CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006320 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0007642 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006603 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0005603 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005646 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0007644 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005421 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0002948 CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0002919 bglA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0003814 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007804 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007292 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0005500 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0111855 bglA CDS
Person Uncurated Go view Salmonella Typhi Ty2 ABS-0084687 bglA CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0003690 bglA CDS
Person Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0099503 bglA CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006211 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0009186 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008194 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0003289 CDS
Person Approved Go view Shigella boydii 227 ADV-0003385 bglA CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0008734 bglA CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003936 bglA CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0074263 bglA CDS
Person Approved Go view Shigella flexneri 301 ABT-0256092 bglA CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0003146 bglA CDS
Person Approved Go view Shigella sonnei 046 ADD-0003337 bglA CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0001630 VC1558 CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001096 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0004276 bglA CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000555 bglA_2 CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001133 CDS
Person Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0236288 bglA CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005589 CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0001181 bglA CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005354 CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002124 bglA CDS
Person Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0119386 bglA CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006113 CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0004679 CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003790 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005338 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005229 CDS
Person Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0032675 bglA CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005378 CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0003271 bglA CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0002928 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006430 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0006716 CDS
Person Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0001361 bglA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0001636 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0003330 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3038662 to 3050101
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0009494dsbCCDScomplement30381123038822Upstream
ABE-0009500xerDCDScomplement30388473039743Upstream
ABE-0009503fldBCDSforward30398553040376Upstream
ABE-0009505ygfXCDScomplement30404163040823Upstream
ABE-0009507sdhECDScomplement30408043041070Upstream
ABE-0009512ygfZCDSforward30413133042293Upstream
ABE-0285556repeat_regionforward30423213042475Upstream
ABE-0009515yqfACDScomplement30424893043148Upstream
ABE-0009518yqfBCDScomplement30433123043623Upstream
ABE-0009523bglACDSforward30436623045101Matches
ABE-0285557repeat_regionforward30451133045140Downstream
ABE-0009526ygfFCDScomplement30451583045901Downstream
ABE-0009531gcvPCDScomplement30461683049041Downstream
ABE-0009534gcvHCDScomplement30491603049549Downstream
ABE-0009536gcvTCDScomplement30495733050667Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.