Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0009536 (gcvT) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0009536 showshow history
Names
gcvT JW2873 ECK2900 b2905
Product
aminomethyltransferase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 3049573 3050667 1095 365
Sequence

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0001061
EnteroFam0009536: Trusted threshold=1007.2; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR006222 (IPR006222 Aminomethyltransferase, folate-binding domain) Apr 2008
Automated Process Approved IPR013977 (IPR013977 Glycine cleavage T-protein, C-terminal barrel domain) Apr 2008
Automated Process Approved IPR006223 (IPR006223 Glycine cleavage system T protein) Apr 2008
Automated Process Approved IPR029043 (IPR029043 Glycine cleavage T-protein/YgfZ, C-terminal) Jul 2018
Automated Process Approved PF08669 (PF08669 Glycine cleavage T-protein C-terminal barrel domain) Jul 2018
Automated Process Approved PF01571 (PF01571 Aminomethyltransferase folate-binding domain) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0009063 cellular amino acid catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006546 glycine catabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006222
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0009257 10-formyltetrahydrofolate biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006222
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0004047 aminomethyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006222
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Uncurated name gcvT Published Sequence Analysis - PubMed ID: 8375392
Reference: Escherichia coli K-12 W3110 		Sep 2021
Person Approved synonym ECK2900 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW2873 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b2905 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product aminomethyltransferase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Sep 2021
Person Uncurated alternate product name T-protein Published Sequence Analysis - PubMed ID: 8375392
Reference: Escherichia coli K-12 W3110 		Sep 2021
Person Uncurated alternate product name glycine cleavage complex protein T, aminomethyltransferase, tetrahydrofolate-dependent Published Annotation - Database Name: GenProtEC Jan 2006
Person Approved alternate product name aminomethyltransferase (T protein; tetrahydrofolate-dependent) of glycine cleavage system Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0009536: Trusted threshold=1007.2; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0001061
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR006223 Glycine cleavage system T protein Protein Sequence Similarity - InterPro Domain: IPR006223
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR006222 Aminomethyltransferase, folate-binding domain Protein Sequence Similarity - InterPro Domain: IPR006222
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR013977 Glycine cleavage T-protein, C-terminal barrel domain Protein Sequence Similarity - InterPro Domain: IPR013977
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF08669 Glycine cleavage T-protein C-terminal barrel domain Protein Sequence Similarity - PFAM Model Name: PF08669
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF01571 Aminomethyltransferase folate-binding domain Protein Sequence Similarity - PFAM Model Name: PF01571
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR029043 Glycine cleavage T-protein/YgfZ, C-terminal Protein Sequence Similarity - InterPro Domain: IPR029043
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Approved EC number 2.1.2.10 Published Annotation - Swiss-Prot Accession Number: P27248 Feb 2006
Person Uncurated MultiFun 1.7.17 (metabolism; central intermediary metabolism; formyl-tetrahydrofolate biosynthesis) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.1.3 (metabolism; carbon utilization; amino acids) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1789272 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:947390 Published Annotation - Entrez Gene Database ID: 947390
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P27248 Published Annotation - Swiss-Prot Accession Number: P27248 Jan 2005
Automated Process Approved db xref UniProtKB/Swiss-Prot:P27248 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0009536 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG11442 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Central intermediary metabolism: Pool, multipurpose conversions Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note aminomethyltransferase (T protein; tetrahydrofolate-dependent) of glycine cleavage system; GO_process: GO:0009063 - cellular amino acid catabolic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC75943.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 9.26
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0006546 glycine catabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006222
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0009257 10-formyltetrahydrofolate biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO biological process GO:0009063 cellular amino acid catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006222
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004047 aminomethyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006222
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0001061 gcvT CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000935 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000813 gcvT CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000975 gcvT CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001196 gcvT CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000710 gcvT CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0002934 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0002953 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0003602 gcvT CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0000338 gcvT CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0003786 gcvT CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0004505 gcvT CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0008513 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0018067 gcvT CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0000664 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0004780 gcvT CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0304951 gcvT CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0000762 gcvT CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002897 gcvT CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0002661 gcvT CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005940 gcvT CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0002928 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008238 gcvT CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0002904 gcvT CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0001373 gcvT CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0006284 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0005743 gcvT CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0010064 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0079646 gcvT CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0003331 gcvT CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0003843 gcvT CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009192 gcvT CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007203 gcvT CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0003360 gcvT CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0007668 gcvT CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0004277 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007533 gcvT CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006053 gcvT CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005530 gcvT CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0005787 gcvT CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0009032 gcvT CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008395 gcvT CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006834 gcvT CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005817 gcvT CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006329 gcvT CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005640 gcvT CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007750 gcvT CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006069 gcvT CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0027915 gcvT CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0008413 gcvT CDS
Automated Process Approved Go view Escherichia coli HS ADR-0007743 gcvT CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0003385 gcvT CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0002976 gcvT CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0003369 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0003510 gcvT CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0003237 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0003231 gcvT CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0177487 gcvT pseudogene
Automated Process Approved Go view Escherichia coli SE11 AFS-0003229 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0003035 gcvT CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0133818 gcvT CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001073 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0003299 gcvT CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0003054 gcvT CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0001439 gcvT CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0003350 gcvT CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0001556 gcvT CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0008299 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0002440 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0002708 gcvT CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0002471 gcvT CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0001535 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0003283 gcvT CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0000918 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0010921 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0000088 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0291173 gcvT CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0006288 gcvT CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0060978 gcvT CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000379 gcvT CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0001372 gcvT CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0001163 gcvT CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0005189 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0145026 gcvT CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0000318 gcvT-1 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0007380 gcvT CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004825 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0003501 gcvT CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007646 gcvT CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0009447 gcvT CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0008935 gcvT CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006316 gcvT CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0007646 gcvT CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006607 gcvT CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0005607 gcvT CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005650 gcvT CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006754 gcvT CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0007648 gcvT CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005416 gcvT CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0002952 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0002923 gcvT CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0003819 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007810 gcvT CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0009247 gcvT CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007296 gcvT CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0005505 gcvT CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0111864 gcvT CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0084691 gcvT CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0003695 gcvT CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0099514 gcvT CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006206 gcvT CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0009181 gcvT CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008200 gcvT CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0001799 gcvT CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0264334 gcvT CDS
Person Approved Go view Shigella boydii 227 ADV-0003381 gcvT CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0008738 gcvT CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003932 gcvT CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0003619 gcvT CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0074269 gcvT CDS
Person Approved Go view Shigella flexneri 301 ABT-0089142 gcvT CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0003150 gcvT CDS
Person Approved Go view Shigella sonnei 046 ADD-0003341 gcvT CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0001945 gcvT CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0003343 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0009823 gcvT CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001717 gcvT CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001228 gcvT CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003850 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0242994 gcvT CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007954 gcvT CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000447 gcvT CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0006738 gcvT CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002441 gcvT CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0118276 gcvT CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006692 gcvT CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0004935 gcvT CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003468 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006554 gcvT CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006579 gcvT CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0033061 gcvT CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0004626 gcvT CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0003738 gcvT CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0000718 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006227 gcvT CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004808 gcvT CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0003289 gcvT CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0003956 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0001017 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0007579 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0002393 gcvT CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB22080mutantTn5 InsertionRequest the StrainABE-0009536gcvTgcvT::Tn5KAN-I-SceI at position 342 in Plus orientation ,+ pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3044573 to 3055667
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0009523bglACDSforward30436623045101Downstream
ABE-0285557repeat_regionforward30451133045140Downstream
ABE-0009526ygfFCDScomplement30451583045901Downstream
ABE-0009531gcvPCDScomplement30461683049041Downstream
ABE-0009534gcvHCDScomplement30491603049549Downstream
ABE-0009536gcvTCDScomplement30495733050667Matches
ABE-0285812yqfICDSforward30509583051041Upstream
ABE-0009543ubiICDScomplement30511153052317Upstream
ABE-0009545ubiHCDScomplement30523403053518Upstream
ABE-0009549pepPCDScomplement30535153054840Upstream
ABE-0009551ygfBCDScomplement30548663055444Upstream
ABE-0009554zapACDSforward30556123055941Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.