Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0009543 (ubiI) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0009543 showshow history
Names
ubiI visC JW2874 ECK2901 b2906
Product
2-octaprenylphenol hydroxylase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 3051115 3052317 1203 401
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0001062
EnteroFam0009543: Trusted threshold=1047.8; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR010971 (IPR010971 Ubiquinone biosynthesis hydroxylase UbiH/COQ6) Apr 2008
Automated Process Approved IPR006076 (IPR006076 FAD dependent oxidoreductase) Apr 2008
Automated Process Approved IPR002938 (IPR002938 FAD-binding domain) Apr 2008
Automated Process Approved IPR003042 (IPR003042 (DEPRECATED) Aromatic-ring hydroxylase-like) Apr 2008
Automated Process Approved IPR036188 (IPR036188 FAD/NAD(P)-binding domain superfamily) Jul 2018
Automated Process Approved PF01494 (PF01494 FAD binding domain) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006744 ubiquinone biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010971
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR010971
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003042
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006725 cellular aromatic compound metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002938
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006118 (OBSOLETE) electron transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006076
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0071949 FAD binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR002938
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO molecular function GO:0016709 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR010971
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0004497 monooxygenase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002938
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0015997 (OBSOLETE) ubiquinone biosynthetic process monooxygenase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010971
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0050660 flavin adenine dinucleotide binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010971
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006076
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Uncurated name ubiI Published Annotation - PubMed ID: 23709220
Reference: Escherichia coli K-12 		Sep 2018
Person Approved synonym ECK2901 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW2874 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym visC Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved locus tag b2906 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product 2-octaprenylphenol hydroxylase Experimental - PubMed ID: 25681964
Reference: Escherichia coli K-12 		Sep 2018
Person Approved alternate product name predicted oxidoreductase with FAD/NAD(P)-binding domain Published Annotation - PubMed ID: 16397293 Jan 2006
Person Uncurated alternate product name coenzyme Q8 biosynthesis FAD-dependent monooxygenase Experimental - PubMed ID: 23709220
Reference: Escherichia coli K-12 		Sep 2018
Person Uncurated alternate product name putative monooxygenase, FAD/NAD(P)-binding Published Annotation - Database Name: GenProtEC Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0009543: Trusted threshold=1047.8; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0001062
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR036188 FAD/NAD(P)-binding domain superfamily Protein Sequence Similarity - InterPro Domain: IPR036188
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF01494 FAD binding domain Protein Sequence Similarity - PFAM Model Name: PF01494
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR002938 FAD-binding domain Protein Sequence Similarity - InterPro Domain: IPR002938
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR003042 (DEPRECATED) Aromatic-ring hydroxylase-like Protein Sequence Similarity - InterPro Domain: IPR003042
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR006076 FAD dependent oxidoreductase Protein Sequence Similarity - InterPro Domain: IPR006076
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR010971 Ubiquinone biosynthesis hydroxylase UbiH/COQ6 Protein Sequence Similarity - InterPro Domain: IPR010971
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Automated Process Uncurated EC number 1.14.13.- Published Annotation - Database Name: EC2GO: GO:0016709
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Approved EC number 1.-.-.- Published Annotation - Swiss-Prot Accession Number: P25535 Feb 2006
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG11333 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1789273 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0009543 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P25535 Published Annotation - Swiss-Prot Accession Number: P25535 Jan 2005
Automated Process Approved db xref GeneID:947389 Published Annotation - Entrez Gene Database ID: 947389
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref UniProtKB/Swiss-Prot:P25535 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC75944.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Unknown Predicted by PSORTb - PSORTb Final_Score: 2.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003042
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR010971
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0006725 cellular aromatic compound metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002938
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006744 ubiquinone biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010971
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006118 (OBSOLETE) electron transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006076
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0015997 (OBSOLETE) ubiquinone biosynthetic process monooxygenase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010971
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0071949 FAD binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR002938
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO molecular function GO:0016709 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR010971
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0004497 monooxygenase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002938
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006076
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0050660 flavin adenine dinucleotide binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010971
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0001062 ubiI CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001265 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001250 visC CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000833 ubiI CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000638 visC CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000813 ubiI CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0000825 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0004099 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0003603 CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0000337 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0003787 visC CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0004506 visC_2 CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0008698 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0018614 ubiI CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0000495 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0004778 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0304953 visC CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0000760 visC CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002900 visC CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0002659 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005938 CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0002929 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008237 CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0002905 visC CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0001372 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0006283 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0005741 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0010065 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0079649 ubiI CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0003332 CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0003845 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009193 CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007205 CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0003361 visC CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0007670 CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0004278 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007536 CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006055 CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005532 CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0005785 CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0009035 CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008397 CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006837 CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005819 CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006331 CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005643 CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007753 CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006071 CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0027916 visC CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0008415 ubiI CDS
Automated Process Approved Go view Escherichia coli HS ADR-0007744 CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0003386 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0002721 visC CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0002977 visC CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0003368 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0003509 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0003236 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0003233 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0177488 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0003230 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0003038 CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0133819 visC CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001074 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0003301 visC CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0003055 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0001438 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0003351 visC CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0001559 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0008500 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0002441 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0002710 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0002472 visC CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0001534 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0003284 visC CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0000917 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0010922 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0000089 CDS
Automated Process Approved Go view Pantoea stewartii DC283 ACV-0291174 visC CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0006289 visC CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0060672 visC CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000314 visC CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0002433 visC CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002886 visC CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0004975 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0145029 visC CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0005299 ubiF CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0007381 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004824 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0003502 visC CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007648 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0009450 visC CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0008938 visC CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006314 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0007648 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006609 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0005609 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006756 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0007649 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005414 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0002953 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0002924 visC CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0003823 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007812 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007298 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0005506 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0111866 visC CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0084692 visC CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0003698 visC CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0099524 visC CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006205 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0001798 CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0264333 CDS
Person Approved Go view Shigella boydii 227 ADV-0003380 visC CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0008739 CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003931 CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0003618 visC CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0074270 visC CDS
Person Approved Go view Shigella flexneri 301 ABT-0089143 visC CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0003151 visC CDS
Person Approved Go view Shigella sonnei 046 ADD-0003342 visC CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0002567 VC2474 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0001942 visC CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0003344 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0009825 visC CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001716 ubiF_2 CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001227 visC CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002223 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0242996 visC CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007953 CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000446 visC CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0006737 CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002440 visC CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0118278 visC CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006693 CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0004934 CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003467 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006555 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006580 CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0033062 visC CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0004627 CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0003739 visC CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0000717 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006228 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004807 CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0003290 visC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0003958 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0001015 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0007575 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0002394 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3046115 to 3057317
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0009531gcvPCDScomplement30461683049041Downstream
ABE-0009534gcvHCDScomplement30491603049549Downstream
ABE-0009536gcvTCDScomplement30495733050667Downstream
ABE-0285812yqfICDSforward30509583051041Downstream
ABE-0009543ubiICDScomplement30511153052317Matches
ABE-0009545ubiHCDScomplement30523403053518Upstream
ABE-0009549pepPCDScomplement30535153054840Upstream
ABE-0009551ygfBCDScomplement30548663055444Upstream
ABE-0009554zapACDSforward30556123055941Upstream
ABE-0009556ssrSncRNAforward30559833056165Upstream
ABE-0009559fauCDSforward30562413056789Upstream
ABE-0047266sibCncRNAforward30568513056991Upstream
ABE-0285209ibsCCDScomplement30568903056949Upstream
ABE-0009561serACDScomplement30571783058410Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.