Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0009561 (serA) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0009561 showshow history
Names
serA JW2880 ECK2909 b2913
Product
D-3-phosphoglycerate dehydrogenase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 3057178 3058410 1233 411
Sequence

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0001068
EnteroFam0009561: Trusted threshold=1162.5; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR006140 (IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain) Apr 2008
Automated Process Approved IPR006139 (IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain) Apr 2008
Automated Process Approved IPR002912 (IPR002912 ACT domain) Apr 2008
Automated Process Approved IPR029015 (IPR029015 (DEPRECATED) D-3-phosphoglycerate dehydrogenase, type2) Jul 2018
Automated Process Approved IPR036291 (IPR036291 NAD(P)-binding domain superfamily) Jul 2018
Automated Process Approved PF01842 (PF01842 ACT domain) Jul 2018
Automated Process Approved PF02826 (PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain) Jul 2018
Automated Process Approved PF00389 (PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR006140, IPR006139
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006139
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO biological process GO:0006564 L-serine biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0004617 phosphoglycerate dehydrogenase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR029015
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0016597 amino acid binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002912
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0048037 (OBSOLETE) cofactor binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006140
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006140
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0051287 NAD binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006139
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name serA Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym ECK2909 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW2880 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b2913 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product D-3-phosphoglycerate dehydrogenase Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name D-3-phosphoglycerate dehydrogenase Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0009561: Trusted threshold=1162.5; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0001068
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain Protein Sequence Similarity - InterPro Domain: IPR006140
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Protein Sequence Similarity - InterPro Domain: IPR006139
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Protein Sequence Similarity - PFAM Model Name: PF02826
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Protein Sequence Similarity - PFAM Model Name: PF00389
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF01842 ACT domain Protein Sequence Similarity - PFAM Model Name: PF01842
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR036291 NAD(P)-binding domain superfamily Protein Sequence Similarity - InterPro Domain: IPR036291
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR002912 ACT domain Protein Sequence Similarity - InterPro Domain: IPR002912
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR029015 (DEPRECATED) D-3-phosphoglycerate dehydrogenase, type2 Protein Sequence Similarity - InterPro Domain: IPR029015
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Automated Process Uncurated EC number 1.1.1.- Published Annotation - Database Name: EC2GO: GO:0016616
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Approved EC number 1.1.1.95 Published Annotation - Swiss-Prot Accession Number: P0A9T0 Feb 2006
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.5.1.11 (metabolism; building block biosynthesis; amino acids; serine) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0009561 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0A9T0 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1789279 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:945258 Published Annotation - Entrez Gene Database ID: 945258
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P0A9T0 Published Annotation - Swiss-Prot Accession Number: P0A9T0 Jan 2006
Automated Process Approved db xref EcoGene:EG10944 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Amino acid biosynthesis: Serine Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note GO_component: GO:0005737 - cytoplasm; GO_process: GO:0006564 - L-serine biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC75950.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 9.97
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR006140, IPR006139
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006139
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO biological process GO:0006564 L-serine biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0051287 NAD binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006139
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0004617 phosphoglycerate dehydrogenase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR029015
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0016597 amino acid binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002912
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0048037 (OBSOLETE) cofactor binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006140
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006140
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0001068 serA CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001650 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000819 serA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000779 serA CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000608 serA CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000542 serA CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0003017 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0003675 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0003610 serA CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0000331 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0003795 serA CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0004513 serA CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0004995 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0015173 serA CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0003711 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0004772 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0304976 serA CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0000754 serA CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002907 serA CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0002652 serA CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005930 serA CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0002935 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008230 serA CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0002911 serA CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0001366 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0006275 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0005731 serA CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008566 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0079655 serA CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0003339 serA CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0003852 serA CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0005765 serA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007215 serA CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0003369 serA CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0007676 serA CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0004284 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007545 serA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006064 serA CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008321 serA CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0005776 serA CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0009044 serA CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0006122 serA CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006847 serA CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005828 serA CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006340 serA CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005652 serA CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005233 serA CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006080 serA CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0027925 serA CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0006941 serA CDS
Automated Process Approved Go view Escherichia coli HS ADR-0007752 serA CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0003392 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0002727 serA CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0002985 serA CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0003358 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0003499 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0003228 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0003239 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0177494 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0003236 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0003044 serA CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0133827 serA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001080 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0003308 serA CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0003063 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0001432 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0003357 serA CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0001565 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0005005 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0002447 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0002716 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0002478 serA CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0001528 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0003291 serA CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0000911 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0010928 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0000095 CDS
Automated Process Approved Go view Pantoea stewartii DC283 ACV-0291180 serA CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0006296 serA CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0064222 serA CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002244 serA CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002283 serA CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0008895 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0145043 serA CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0005372 serA CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0007390 serA CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004816 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0003512 serA CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007656 serA CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0009471 serA CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0008957 serA CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008817 serA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0007656 serA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006618 serA CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0005617 serA CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0008542 serA CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006765 serA CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0007658 serA CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005406 serA CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0002961 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0002932 serA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0003831 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007820 serA CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008313 serA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007306 serA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0005514 serA CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0111880 serA CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0084699 serA CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0003705 serA CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0099540 serA CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006197 serA CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0004819 serA CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0001792 CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0264417 serA CDS
Person Approved Go view Shigella boydii 227 ADV-0003374 serA CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0008747 serA CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003923 serA CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0003612 serA CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0074277 serA CDS
Person Approved Go view Shigella flexneri 301 ABT-0089150 serA CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0003157 serA CDS
Person Approved Go view Shigella sonnei 046 ADD-0003348 serA CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0002574 VC2481 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0001928 serA CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0003075 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0009844 serA CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001710 serA2 CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001221 serA CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002229 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0243007 serA CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007946 serA CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000437 serA CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0006731 serA CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002436 serA CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0118293 serA CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006699 serA CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0004928 serA CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006561 serA CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006587 serA CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0033069 serA CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0004634 serA CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0003748 serA CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0000707 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006234 serA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004800 serA CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0003297 serA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0003966 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0001007 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0007554 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0002400 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB20971mutantTn5 InsertionRequest the StrainABE-0009561serAserA::Tn5KAN-I-SceI at position 572 in Minus orientation ,+ pKD460Blattner Laboratory
FB20972mutantTn5 InsertionRequest the StrainABE-0009561serAserA::Tn5KAN-I-SceI at position 572 in Minus orientation ,- pKD465Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3052178 to 3063410
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0009543ubiICDScomplement30511153052317Downstream
ABE-0009545ubiHCDScomplement30523403053518Downstream
ABE-0009549pepPCDScomplement30535153054840Downstream
ABE-0009551ygfBCDScomplement30548663055444Downstream
ABE-0009554zapACDSforward30556123055941Downstream
ABE-0009556ssrSncRNAforward30559833056165Downstream
ABE-0009559fauCDSforward30562413056789Downstream
ABE-0047266sibCncRNAforward30568513056991Downstream
ABE-0285209ibsCCDScomplement30568903056949Downstream
ABE-0009561serACDScomplement30571783058410Matches
ABE-0009567rpiACDScomplement30586663059325Upstream
ABE-0009570yqfEpseudogenecomplement30593813059573Upstream
ABE-0009574argPCDSforward30597533060646Upstream
ABE-0285558repeat_regionforward30606603060680Upstream
ABE-0009577scpACDSforward30608503062994Upstream
ABE-0009579argKCDSforward30629873063982Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.