Escherichia coli K-12 MG1655
About ASAP Data Release Policy University of Wisconsin—Madison
Home    Overview    Annotations    BLAST    Downloads    Comparative Genomics    Experiments    Strains    Help (this script)    User: guest  / Log On   
Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0009583 (scpC) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0009583 showshow history
Names
scpC JW2887 ECK2916 ygfH b2920
Product
propionyl-CoA:succinate-CoA transferase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 3064802 3066280 1479 493
Sequence

Get full DNA or protein sequence

View sequence with flanking regions: bases upstream and bases downstream

Context

Browse sequence in GaPP

You last hovered over feature (none)
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR003702 (IPR003702 Acetyl-CoA hydrolase/transferase) Apr 2008
Automated Process Approved IPR026888 (IPR026888 Acetyl-CoA hydrolase/transferase C-terminal domain) Jul 2018
Automated Process Approved IPR017821 (IPR017821 Succinate CoA transferase) Jul 2018
Automated Process Approved IPR037171 (IPR037171 NagB/RpiA transferase-like) Jul 2018
Automated Process Approved PF13336 (PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain) Jul 2018
Automated Process Approved PF02550 (PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006084 acetyl-CoA metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003702
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0016740 transferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR017821
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003702
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Uncurated name scpC Published Annotation in EcoGene - EG Number: EG12973
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym ECK2916 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW2887 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ygfH Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved locus tag b2920 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product propionyl-CoA:succinate-CoA transferase Published Annotation - PubMed ID: 16397293 Jan 2006
Person Uncurated alternate product name propionyl-CoA:succinate-CoA transferase Published Annotation - Database Name: GenProtEC Jan 2006
Person Approved alternate product name putative coenzyme A transferase Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Automated Process Approved alternate product name propionyl-CoA:succinate CoA transferase Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Protein Family
Automated Process Approved protein family IPR003702 Acetyl-CoA hydrolase/transferase Protein Sequence Similarity - InterPro Domain: IPR003702
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR026888 Acetyl-CoA hydrolase/transferase C-terminal domain Protein Sequence Similarity - InterPro Domain: IPR026888
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain Protein Sequence Similarity - PFAM Model Name: PF02550
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain Protein Sequence Similarity - PFAM Model Name: PF13336
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR037171 NagB/RpiA transferase-like Protein Sequence Similarity - InterPro Domain: IPR037171
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR017821 Succinate CoA transferase Protein Sequence Similarity - InterPro Domain: IPR017821
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Automated Process Uncurated EC number 2.-.-.- Published Annotation - Database Name: EC2GO: GO:0016740
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated MultiFun 1.7.1 (metabolism; central intermediary metabolism; unassigned reversible reactions) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P52043 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0009583 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1789287 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:947402 Published Annotation - Entrez Gene Database ID: 947402
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P52043 Published Annotation - Swiss-Prot Accession Number: P52043 Jan 2005
Automated Process Approved db xref EcoGene:EG12973 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved function enzyme; Not classified Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved note putative coenzyme A transferase Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC75957.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Unknown Predicted by PSORTb - PSORTb Final_Score: 2.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0006084 acetyl-CoA metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003702
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003702
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0016740 transferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR017821
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0006836 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0004272 scpC CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0004568 scpC CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0003817 scpC CDS
Ortholog
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0001583 scpC CDS
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0004519 scpC CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0002646 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005921 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008221 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0006268 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0005723 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008574 CDS
Person Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0082019 scpC pseudogene
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0003349 CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0003861 ygfH CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0005757 CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007223 CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0004291 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007553 CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006072 CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008329 CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0005768 CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0009052 CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0006114 CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006855 CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005836 CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006348 CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005661 CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005242 CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0027931 ygfH CDS
Automated Process Approved Go view Escherichia coli HS ADR-0007759 CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0002992 ygfH CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0003351 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0003492 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0003221 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0003243 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0003054 CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0133833 CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001087 CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0005550 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004810 CDS
Person Approved Go view Shigella boydii 227 ADV-0003368 ygfH CDS
Person Uncurated Go view Shigella flexneri 2457T ABQ-0074284 scpC pseudogene
Person Uncurated Go view Shigella flexneri 301 ABT-0089156 ygfH pseudogene
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0003163 ygfH CDS
Person Approved Go view Shigella sonnei 046 ADD-0003354 ygfH CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0005577 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000847 scpC CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000170 scpC CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001668 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0007518 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0002406 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB22498mutantTn5 InsertionRequest the StrainABE-0009583scpCygfH::Tn5KAN-I-SceI at position 1297 in Minus orientation ,+ pKD460Blattner Laboratory
FB23243mutantTn5 InsertionRequest the StrainABE-0009583scpCygfH::Tn5KAN-I-SceI at position 1297 in Minus orientation ,- pKD465Tim Durfee (durf@genome.wisc.edu)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3059802 to 3071280
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0009574argPCDSforward30597533060646Upstream
ABE-0285558repeat_regionforward30606603060680Upstream
ABE-0009577scpACDSforward30608503062994Upstream
ABE-0009579argKCDSforward30629873063982Upstream
ABE-0009581scpBCDSforward30639933064778Upstream
ABE-0009583scpCCDSforward30648023066280Matches
ABE-0009585ygfICDScomplement30662773067173Overlaps Downstream
ABE-0009588yggECDScomplement30673403068080Downstream
ABE-0009591argOCDScomplement30681733068808Downstream
ABE-0009595mscSCDScomplement30689473069807Downstream
ABE-0285559repeat_regionforward30700033070100Downstream
ABE-0009600fbaACDScomplement30701653071244Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.