Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0009591 (argO) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0009591 showshow history
Names
argO yggA JW2890 ECK2919 b2923
Product
arginine transporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 3068173 3068808 636 212
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0001072
EnteroFam0009591: Trusted threshold=491.8; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR004777 (IPR004777 L-lysine exporter/arginine exporter) Apr 2008
Automated Process Approved IPR003016 (IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site) Apr 2008
Automated Process Approved IPR001123 (IPR001123 Amino acid exporter protein, LeuE-type) Apr 2008
Automated Process Approved PF01810 (PF01810 LysE type translocator) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006865 amino acid transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001123
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001123
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004777
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0005293 (DEPRECATED) lysine permease activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001123
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name argO Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK2919 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym yggA Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Approved synonym JW2890 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b2923 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product arginine transporter Published Annotation - PubMed ID: 16397293 Jan 2006
Person Uncurated alternate product name putative amino acid transport protein (LYSE family) Published Annotation - Database Name: GenProtEC Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0009591: Trusted threshold=491.8; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0001072
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Protein Sequence Similarity - InterPro Domain: IPR003016
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR004777 L-lysine exporter/arginine exporter Protein Sequence Similarity - InterPro Domain: IPR004777
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR001123 Amino acid exporter protein, LeuE-type Protein Sequence Similarity - InterPro Domain: IPR001123
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF01810 LysE type translocator Protein Sequence Similarity - PFAM Model Name: PF01810
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Uncurated MultiFun 4.S.12 (transport; substrate; amino acid) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.2.A.75 (transport; Electrochemical potential driven transporters; Porters (Uni-, Sym- and Antiporters); The L-lysine exporter (LysE) Family) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG11159 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P11667 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:947418 Published Annotation - Entrez Gene Database ID: 947418
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P11667 Published Annotation - Swiss-Prot Accession Number: P11667 Jan 2005
Automated Process Approved db xref ASAP:ABE-0009591 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1789290 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC75960.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0006865 amino acid transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001123
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004777
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001123
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005293 (DEPRECATED) lysine permease activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001123
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0001072 argO CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001646 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001321 argO CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001405 argO CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001587 argO CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001252 argO CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0003012 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0003670 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0003614 argO CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0000327 lysE CDS
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0000829 argO CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0004522 argO CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0008764 CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0000443 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0004768 lysE CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0305016 argO CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0000743 yggA CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002911 argO CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0002641 argO CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005918 argO CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0002942 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008218 argO CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0002917 yggA CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0001358 lysE CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0006263 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0005720 argO CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008577 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0079662 argO CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0003352 argO CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0003864 lysE CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0005754 argO CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007226 argO CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0003375 argO CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0007686 argO CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0004295 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007558 argO CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006076 argO CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008333 argO CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0005764 argO CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0009056 argO CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0006110 argO CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006859 argO CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005840 argO CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006352 argO CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005665 argO CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005246 argO CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006094 argO CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0027934 argO CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0006934 argO CDS
Automated Process Approved Go view Escherichia coli HS ADR-0007762 argO CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0003399 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0002735 argO CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0002995 argO CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0003348 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0003473 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0003218 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0003246 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0177501 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0003246 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0003057 argO CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0133837 argO CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001091 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0003315 yggA CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0003067 lysE CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0001427 lysE CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0003361 yggA CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0001569 lysE CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0005000 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0002451 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0002720 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0002482 argO CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0001523 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0003295 argO CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0000907 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0010935 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0000099 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0291185 argO CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0006301 yggA CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0064226 argO CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002250 CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0001010 CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002293 argO CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0008900 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0145064 CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0004436 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0007395 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004807 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0003518 argO CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0009487 yggA CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0008973 yggA CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008812 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0007661 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006623 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0005621 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0008547 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006770 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0007663 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005401 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0002965 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0002936 argO CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0003838 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007825 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008308 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007310 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0005518 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0111891 argO CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0084703 argO CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0003712 yggA CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0099552 argO CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006192 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0006275 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0004814 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0001788 lysE CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0266475 CDS
Person Approved Go view Shigella boydii 227 ADV-0003363 yggA CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0008762 argO CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003912 argO CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0003600 yggA CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0074287 argO CDS
Person Approved Go view Shigella flexneri 301 ABT-0089158 argO CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0003166 yggA CDS
Person Approved Go view Shigella sonnei 046 ADD-0003359 argO CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0000529 VC0481 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0001918 yggA CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0003079 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0009858 yggA CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001706 yggA CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003859 argO CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002233 CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007942 argO CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000428 CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0006727 argO CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002432 CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0118305 argO CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006703 argO CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0004924 argO CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006565 argO CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006591 argO CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0033073 argO CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0004638 argO CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0003753 argO CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0000702 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006241 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004796 argO CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0003301 argO CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0003971 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0001002 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0007509 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0002409 lysE CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3063173 to 3073808
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0009579argKCDSforward30629873063982Downstream
ABE-0009581scpBCDSforward30639933064778Downstream
ABE-0009583scpCCDSforward30648023066280Downstream
ABE-0009585ygfICDScomplement30662773067173Downstream
ABE-0009588yggECDScomplement30673403068080Downstream
ABE-0009591argOCDScomplement30681733068808Matches
ABE-0009595mscSCDScomplement30689473069807Upstream
ABE-0285559repeat_regionforward30700033070100Upstream
ABE-0009600fbaACDScomplement30701653071244Upstream
ABE-0009605pgkCDScomplement30714593072622Upstream
ABE-0009607epdCDScomplement30726723073691Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.