Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0009600 (fbaA) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0009600 showshow history
Names
fbaA ECK2921 JW2892 fda ald fba b2925
Product
fructose-bisphosphate aldolase class II
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 3070165 3071244 1080 360
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0001074
EnteroFam0009600: Trusted threshold=1010.4; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR013785 (IPR013785 Aldolase-type TIM barrel) Apr 2008
Automated Process Approved IPR000771 (IPR000771 Fructose-bisphosphate aldolase, class-II) Apr 2008
Automated Process Approved IPR006411 (IPR006411 Fructose-bisphosphate aldolase, class II, yeast/E. coli subtype) Apr 2008
Automated Process Approved PF01116 (PF01116 Fructose-bisphosphate aldolase class-II) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006096 glycolytic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000771
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO biological process GO:0005975 carbohydrate metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR000771
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013785
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0016832 aldehyde-lyase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR000771
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0008270 zinc ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000771
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004332 fructose-bisphosphate aldolase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000771
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013785
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name fbaA Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym ald Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved synonym fda Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved synonym ECK2921 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW2892 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym fba Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved locus tag b2925 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product fructose-bisphosphate aldolase class II Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Oct 2021
Person Approved alternate product name fructose-bisphosphate aldolase, class II Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0009600: Trusted threshold=1010.4; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0001074
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family PF01116 Fructose-bisphosphate aldolase class-II Protein Sequence Similarity - PFAM Model Name: PF01116
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR006411 Fructose-bisphosphate aldolase, class II, yeast/E. coli subtype Protein Sequence Similarity - InterPro Domain: IPR006411
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR013785 Aldolase-type TIM barrel Protein Sequence Similarity - InterPro Domain: IPR013785
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR000771 Fructose-bisphosphate aldolase, class-II Protein Sequence Similarity - InterPro Domain: IPR000771
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Approved EC number 4.1.2.13 Published Annotation - Swiss-Prot Accession Number: P0AB71 Feb 2006
Automated Process Uncurated EC number 4.1.2.- Published Annotation - Database Name: EC2GO: GO:0016832
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated MultiFun 1.1.1 (metabolism; carbon utilization; carbon compounds) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10282 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1789293 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:947415 Published Annotation - Entrez Gene Database ID: 947415
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P0AB71 Published Annotation - Swiss-Prot Accession Number: P0AB71 Jan 2006
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0AB71 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0009600 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Energy metabolism, carbon: Glycolysis Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Uncurated molecular interaction Interacts with the product of dnaK ASAP:52:(interacting residues not known); by MALDI-TOF and LC-MS Experimental - PubMed ID: 15690043
Reference: Escherichia coli K-12 W3110 		Mar 2005
Automated Process Approved note GO_process: GO:0016052 - carbohydrate catabolic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC75962.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Unknown Predicted by PSORTb - PSORTb Final_Score: 2.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Uncurated GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006096 glycolytic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000771
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013785
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO biological process GO:0005975 carbohydrate metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR000771
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0004332 fructose-bisphosphate aldolase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000771
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0016832 aldehyde-lyase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR000771
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0008270 zinc ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000771
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013785
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0001074 fbaA CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001644 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000406 fbaA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000306 fbaA CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000320 fbaA CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001176 fbaA CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0003010 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0003667 CDS
Person Uncurated Go view Buchnera aphidicola APS ABZ-0129721 fba CDS
Person Uncurated Go view Buchnera aphidicola Bp ABW-0105127 fba CDS
Person Uncurated Go view Buchnera aphidicola Sg [T] ABV-0104565 fba CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0003621 fbaA CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0000319 fbaA CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0000821 fbaA CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0004524 fbaA_3 CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0004988 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0015181 fbaA CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0003718 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0004766 fbaA CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0305025 fbaA CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0000741 fba CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002913 fba CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0002637 fbaA CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005916 fbaA CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0002944 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008216 fbaA CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0002919 fba CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0001356 fbaA CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0006261 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0005718 fbaA CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008579 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0079664 fbaA CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0003354 fbaA CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0003866 fbaA CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0005752 fbaA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007230 fbaA CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0003377 fbaA CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0007689 fbaA CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0004297 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007560 fbaA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006078 fbaA CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008335 fbaA CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0005762 fbaA CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0009058 fbaA CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0006108 fbaA CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006861 fbaA CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005842 fbaA CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006354 fbaA CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005667 fbaA CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005248 fbaA CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006096 fbaA CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0027936 fbaA CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0006932 fbaA_2 CDS
Automated Process Approved Go view Escherichia coli HS ADR-0007764 fbaA CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0002737 fbaA CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0002997 fbaA CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0003345 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0003470 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0003215 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0003248 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0177503 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0003250 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0003060 fbaA CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0133839 fbaA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001093 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0003317 fbaA CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0003073 fbaA CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0001425 fbaA CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0003363 fbaA CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0001571 fbaA CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0004998 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0002453 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0002722 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0002484 fbaA CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0001520 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0003298 fbaA CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0000904 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0010937 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0000101 CDS
Automated Process Approved Go view Pantoea stewartii DC283 ACV-0291187 fbaA CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0006303 fba CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0064228 fbaA CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002240 fbaA CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0001011 fbaA CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002307 fbaA CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0008917 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0138945 fbaA CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0007397 fbaA CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004805 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0003520 fbaA CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007663 fbaA CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0009496 fba CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0008982 fba CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008809 fbaA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0007664 fbaA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006626 fbaA CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0005623 fbaA CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0008550 fbaA CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006773 fbaA CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0007666 fbaA CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005398 fbaA CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0002967 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0002938 fbaA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0003841 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007827 fbaA CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008306 fbaA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007312 fbaA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0005520 fbaA CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0111899 fbaA CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0084706 fbaA CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0003714 fba CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0099558 fbaA CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006189 fbaA CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0006273 fbaA CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0004812 fbaA CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0001767 fbaA CDS
Person Approved Go view Shigella boydii 227 ADV-0003361 fbaA CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0008764 fbaA CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003910 fbaA CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0003598 fbaA CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0074289 fbaA CDS
Person Approved Go view Shigella flexneri 301 ABT-0089160 fbaA CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0003168 fba CDS
Person Approved Go view Shigella sonnei 046 ADD-0003361 fbaA CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0000526 VC0478 CDS
Person Uncurated Go view Wigglesworthia morsitans AEQ-0000474 fbaA CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0005412 fbaA CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0003082 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0009876 fba CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001702 fba CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003857 fbaA CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002235 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0242817 fbaA CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007940 fbaA CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000426 fbaA CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0006725 fbaA CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002430 fbaA CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0118319 fbaA CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006705 fbaA CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0004922 fbaA CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006567 fbaA CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006593 fbaA CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0033075 fbaA CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0004640 fbaA CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0003755 fbaA CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0000700 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006243 fbaA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004794 fbaA CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0003303 fbaA pseudogene
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0003973 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0001000 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0007477 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0002417 fbaA CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3065165 to 3076244
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0009583scpCCDSforward30648023066280Downstream
ABE-0009585ygfICDScomplement30662773067173Downstream
ABE-0009588yggECDScomplement30673403068080Downstream
ABE-0009591argOCDScomplement30681733068808Downstream
ABE-0009595mscSCDScomplement30689473069807Downstream
ABE-0285559repeat_regionforward30700033070100Downstream
ABE-0009600fbaACDScomplement30701653071244Matches
ABE-0009605pgkCDScomplement30714593072622Upstream
ABE-0009607epdCDScomplement30726723073691Upstream
ABE-0009610yggCCDScomplement30739763074689Upstream
ABE-0009612fumECDScomplement30746863075195Upstream
ABE-0009615yggFCDScomplement30752173076182Upstream
ABE-0174095yggPCDScomplement30761793077456Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.