Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0009605 (pgk) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0009605 showshow history
Names
pgk JW2893 ECK2922 b2926
Product
phosphoglycerate kinase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 3071459 3072622 1164 388
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0001075
EnteroFam0009605: Trusted threshold=1114.5; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR001576 (IPR001576 Phosphoglycerate kinase) Apr 2008
Automated Process Approved IPR036043 (IPR036043 Phosphoglycerate kinase superfamily) Jul 2018
Automated Process Approved PF00162 (PF00162 Phosphoglycerate kinase) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Approved GO biological process GO:0006096 glycolytic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006096 glycolytic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001576
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0006094 gluconeogenesis Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0004618 phosphoglycerate kinase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001576
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name pgk Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym ECK2922 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW2893 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b2926 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product phosphoglycerate kinase Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name phosphoglycerate kinase Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0009605: Trusted threshold=1114.5; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0001075
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family PF00162 Phosphoglycerate kinase Protein Sequence Similarity - PFAM Model Name: PF00162
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR036043 Phosphoglycerate kinase superfamily Protein Sequence Similarity - InterPro Domain: IPR036043
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR001576 Phosphoglycerate kinase Protein Sequence Similarity - InterPro Domain: IPR001576
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Approved EC number 2.7.2.3 Published Annotation - Swiss-Prot Accession Number: P0A799 Feb 2006
Person Uncurated MultiFun 1.3.1 (metabolism; energy metabolism, carbon; glycolysis) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.7.8 (metabolism; central intermediary metabolism; gluconeogenesis) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P0A799 Published Annotation - Swiss-Prot Accession Number: P0A799 Jan 2006
Automated Process Approved db xref EcoGene:EG10703 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:947414 Published Annotation - Entrez Gene Database ID: 947414
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref GI:1789294 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0A799 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0009605 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Energy metabolism, carbon: Glycolysis Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note GO_component: GO:0005737 - cytoplasm; GO_process: GO:0006096 - glycolysis; GO_process: GO:0006094 - gluconeogenesis Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC75963.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 9.26
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Approved GO biological process GO:0006096 glycolytic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO biological process GO:0006094 gluconeogenesis Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006096 glycolytic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001576
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0004618 phosphoglycerate kinase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001576
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0001075 pgk CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001643 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000211 pgk CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000268 pgk CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000319 pgk CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000901 pgk CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0003009 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0003666 CDS
Person Uncurated Go view Buchnera aphidicola APS ABZ-0129720 pgk CDS
Person Uncurated Go view Buchnera aphidicola Bp ABW-0105126 pgk CDS
Person Uncurated Go view Buchnera aphidicola Sg [T] ABV-0104564 pgk CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0003622 pgk CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0000318 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0000820 pgk CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0004525 pgk CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0004987 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0015182 pgk CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0003719 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0004765 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0305029 pgk CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0000740 pgk CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002914 pgk CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0002636 pgk CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005915 pgk CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0002945 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008215 pgk CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0002920 pgk CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0001355 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0006260 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0005717 pgk CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008580 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0079665 pgk CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0003355 pgk CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0003867 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0005751 pgk CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007231 pgk CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0003378 pgk CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0007690 pgk CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0004298 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007561 pgk CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006079 pgk CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008336 pgk CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0005761 pgk CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0009059 pgk CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0006107 pgk CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006862 pgk CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005843 pgk CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006355 pgk CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005668 pgk CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005249 pgk CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006097 pgk CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0027937 pgk CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0006931 pgk CDS
Automated Process Approved Go view Escherichia coli HS ADR-0007765 pgk CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0003402 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0002738 pgk CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0002998 pgk CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0003344 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0003469 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0003214 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0003249 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0003251 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0003061 pgk CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0133840 pgk CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001094 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0003318 pgk CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0003074 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0001424 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0003364 pgk CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0001572 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0004997 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0002454 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0002723 pgk CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0002485 pgk CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0001519 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0003299 pgk CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0000903 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0010938 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0000102 CDS
Automated Process Approved Go view Pantoea stewartii DC283 ACV-0291188 pgk CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0006304 pgk CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0064229 pgk CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002239 pgk CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0001012 pgk CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002308 pgk CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0008918 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0138942 pgk CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0000389 pgk CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0007398 pgk CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004804 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0003521 pgk CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007664 pgk CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0009500 pgk CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0008986 pgk CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008808 pgk CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0007665 pgk CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006627 pgk CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0005624 pgk CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0008551 pgk CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006774 pgk CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0007667 pgk CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005397 pgk CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0002968 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0002939 pgk CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0003842 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007828 pgk CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008305 pgk CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007313 pgk CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0005521 pgk CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0111903 pgk CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0084707 pgk CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0003715 pgk CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0099561 pgk CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006188 pgk CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0006272 pgk CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0004811 pgk CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0001766 CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0264487 pgk CDS
Person Approved Go view Shigella boydii 227 ADV-0003360 pgk CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0008765 pgk CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003909 pgk CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0003597 pgk CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0074291 pgk CDS
Person Approved Go view Shigella flexneri 301 ABT-0089161 pgk CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0003169 pgk CDS
Person Approved Go view Shigella sonnei 046 ADD-0003362 pgk CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0000525 VC0477 CDS
Person Uncurated Go view Wigglesworthia morsitans AEQ-0000473 pgk CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0005415 pgk CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0003083 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0009880 pgk CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001701 pgk CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003856 pgk CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002236 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0242816 pgk CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007939 pgk CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000425 pgk CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0006724 pgk CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002429 pgk CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0118323 pgk CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006706 pgk CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0004921 pgk CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006568 pgk CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006594 pgk CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0033076 pgk CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0004641 pgk CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0003756 pgk CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0000699 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006244 pgk CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004793 pgk CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0003304 pgk CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0003974 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0000999 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0007470 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0002418 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB20977mutantTn5 InsertionRequest the StrainABE-0009605pgkpgk::Tn5KAN-I-SceI at position 880 in Plus orientation ,- pKD465Blattner Laboratory
FB20978mutantTn5 InsertionRequest the StrainABE-0009605pgkpgk::Tn5KAN-I-SceI at position 880 in Plus orientation ,+ pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3066459 to 3077622
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0009585ygfICDScomplement30662773067173Downstream
ABE-0009588yggECDScomplement30673403068080Downstream
ABE-0009591argOCDScomplement30681733068808Downstream
ABE-0009595mscSCDScomplement30689473069807Downstream
ABE-0285559repeat_regionforward30700033070100Downstream
ABE-0009600fbaACDScomplement30701653071244Downstream
ABE-0009605pgkCDScomplement30714593072622Matches
ABE-0009607epdCDScomplement30726723073691Upstream
ABE-0009610yggCCDScomplement30739763074689Upstream
ABE-0009612fumECDScomplement30746863075195Upstream
ABE-0009615yggFCDScomplement30752173076182Upstream
ABE-0174095yggPCDScomplement30761793077456Upstream
ABE-0009621cmtACDScomplement30774713078859Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.