Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0009607 (epd) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0009607 showshow history
Names
epd JW2894 ECK2923 gapB b2927
Product
D-erythrose 4-phosphate dehydrogenase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 3072672 3073691 1020 340
Sequence

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0001076
EnteroFam0009607: Trusted threshold=956.8; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR000173 (IPR000173 (DEPRECATED) Glyceraldehyde 3-phosphate dehydrogenase) Apr 2008
Automated Process Approved IPR006422 (IPR006422 D-erythrose-4-phosphate dehydrogenase) Apr 2008
Automated Process Approved IPR020829 (IPR020829 Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain) Jul 2018
Automated Process Approved IPR020828 (IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain) Jul 2018
Automated Process Approved IPR036291 (IPR036291 NAD(P)-binding domain superfamily) Jul 2018
Automated Process Approved PF02800 (PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain) Jul 2018
Automated Process Approved PF00044 (PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0008615 pyridoxine biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0042823 pyridoxal phosphate biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR006422
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR020829, IPR020828, IPR006422
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO biological process GO:0006094 gluconeogenesis Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Approved GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0048001 erythrose-4-phosphate dehydrogenase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR006422
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO molecular function GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR020829, IPR020828
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0051287 NAD binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006422
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006422
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name epd Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym gapB Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved synonym ECK2923 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW2894 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b2927 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product D-erythrose 4-phosphate dehydrogenase Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name D-erythrose 4-phosphate dehydrogenase Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0009607: Trusted threshold=956.8; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0001076
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR000173 (DEPRECATED) Glyceraldehyde 3-phosphate dehydrogenase Protein Sequence Similarity - InterPro Domain: IPR000173
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain Protein Sequence Similarity - PFAM Model Name: PF02800
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Protein Sequence Similarity - PFAM Model Name: PF00044
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR036291 NAD(P)-binding domain superfamily Protein Sequence Similarity - InterPro Domain: IPR036291
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain Protein Sequence Similarity - InterPro Domain: IPR020828
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR006422 D-erythrose-4-phosphate dehydrogenase Protein Sequence Similarity - InterPro Domain: IPR006422
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR020829 Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain Protein Sequence Similarity - InterPro Domain: IPR020829
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Automated Process Uncurated EC number 1.2.1.72 Published Annotation - Database Name: EC2GO: GO:0048001
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Approved EC number 1.2.1.- Published Annotation - Swiss-Prot Accession Number: P0A9B6 Feb 2006
Person Uncurated MultiFun 1.5.3.6 (metabolism; building block biosynthesis; cofactor, small molecule carrier; pyridoxine (vitamin B6)) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.7.8 (metabolism; central intermediary metabolism; gluconeogenesis) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:947413 Published Annotation - Entrez Gene Database ID: 947413
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P0A9B6 Published Annotation - Swiss-Prot Accession Number: P0A9B6 Jan 2006
Automated Process Approved db xref GI:1789295 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10368 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0A9B6 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0009607 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Central intermediary metabolism Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note GO_component: GO:0005737 - cytoplasm; GO_process: GO:0008615 - pyridoxine biosynthetic process; GO_process: GO:0006094 - gluconeogenesis Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC75964.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 9.97
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR020829, IPR020828, IPR006422
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO biological process GO:0042823 pyridoxal phosphate biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR006422
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO biological process GO:0008615 pyridoxine biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO biological process GO:0006094 gluconeogenesis Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Approved GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR020829, IPR020828
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO molecular function GO:0048001 erythrose-4-phosphate dehydrogenase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR006422
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0051287 NAD binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006422
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006422
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0001076 epd CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001642 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000974 epd CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000835 epd CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001717 epd CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000511 epd CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0003008 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0003665 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0003623 epd CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0000317 epd CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0000819 epd CDS
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0004526 epd CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0004986 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0015183 epd CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0003720 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0004764 epd CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0305032 epd CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0000739 epd CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002915 epd CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0002635 epd CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005914 epd CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0002946 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008214 epd CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0002921 epd CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0001354 epd CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0006259 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0005716 epd CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008581 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0079666 epd CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0003356 epd CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0003868 epd CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0005750 epd CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007232 epd CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0003379 epd CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0007691 epd CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0004299 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007562 epd CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006080 epd CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008337 epd CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0005760 epd CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0009060 epd CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0006106 epd CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006863 epd CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005844 epd CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006356 epd CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005669 epd CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005250 epd CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006098 epd CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0027938 epd CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0006930 epd CDS
Automated Process Approved Go view Escherichia coli HS ADR-0007766 epd CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0003403 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0002739 epd CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0002999 epd CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0003343 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0003468 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0003213 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0003250 gapA CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0177506 gapA CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0003252 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0003062 epd CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0133841 epd CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001095 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0003319 epd CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0003075 epd CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0001423 epd CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0003365 epd CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0001573 epd CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0004996 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0002455 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0002724 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0002486 epd CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0001518 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0003300 epd CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0000902 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0010939 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0000103 CDS
Automated Process Approved Go view Pantoea stewartii DC283 ACV-0291189 epd CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0006305 epd CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0064230 epd CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002238 epd CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0001013 epd CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002309 epd CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0008919 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0138939 epd CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0000388 epd CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0007399 epd CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004803 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0003522 epd CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007665 epd CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0009503 epd CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0008989 epd CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008807 epd CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0007666 epd CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006628 epd CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0005625 epd CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0008552 epd CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006775 epd CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0007668 epd CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005396 epd CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0002969 CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0002940 epd CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0003843 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007829 epd CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008304 epd CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007314 epd CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0005522 epd CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0111906 epd CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0084708 epd CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0003716 epd CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0099564 epd CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006187 epd CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0006271 epd CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0004810 epd CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0001765 epd CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0264486 epd CDS
Person Approved Go view Shigella boydii 227 ADV-0003359 epd CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0008766 epd CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003908 epd CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0003596 epd CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0074292 epd CDS
Person Approved Go view Shigella flexneri 301 ABT-0089162 epd CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0003170 epd CDS
Person Approved Go view Shigella sonnei 046 ADD-0003363 epd CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0000524 VC0476 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0005416 epd CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0003084 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0009883 epd CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001700 epd CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003855 epd CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002237 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0242815 epd CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007938 epd CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000424 epd CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0006723 epd CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002428 epd CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0118326 epd CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006707 epd CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0004920 epd CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006569 epd CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006595 epd CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0033077 epd CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0004642 epd CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0003757 epd CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0000698 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006245 epd CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004792 epd CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0003305 epd CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0003975 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0000998 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0007466 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0002419 epd CDS
Molecular Interactions to toptop
Author Approval Feature Name Technique Evidence Comment Annotated
Person Approved ABE-0009607 epd lambda repressor assay Doodle - bnumber: b2927 Oct 2003
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB20979mutantTn5 InsertionRequest the StrainABE-0009607epdepd::Tn5KAN-I-SceI at position 643 in Plus orientation ,+ pKD460Blattner Laboratory
FB20980mutantTn5 InsertionRequest the StrainABE-0009607epdepd::Tn5KAN-I-SceI at position 643 in Plus orientation ,- pKD465Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3067672 to 3078691
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0009588yggECDScomplement30673403068080Downstream
ABE-0009591argOCDScomplement30681733068808Downstream
ABE-0009595mscSCDScomplement30689473069807Downstream
ABE-0285559repeat_regionforward30700033070100Downstream
ABE-0009600fbaACDScomplement30701653071244Downstream
ABE-0009605pgkCDScomplement30714593072622Downstream
ABE-0009607epdCDScomplement30726723073691Matches
ABE-0009610yggCCDScomplement30739763074689Upstream
ABE-0009612fumECDScomplement30746863075195Upstream
ABE-0009615yggFCDScomplement30752173076182Upstream
ABE-0174095yggPCDScomplement30761793077456Upstream
ABE-0009621cmtACDScomplement30774713078859Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.