Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0009615 (yggF) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0009615 showshow history
Names
yggF yggK JW2897 ECK2926 b2930
Product
fructose 1,6-bisphosphatase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 3075217 3076182 966 322
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR004464 (IPR004464 Fructose-1,6-bisphosphatase class 2/Sedoheputulose-1,7-bisphosphatase) Apr 2008
Automated Process Approved PF03320 (PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006071 glycerol metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004464
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO biological process GO:0006094 gluconeogenesis GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR004464
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO molecular function GO:0042132 fructose 1,6-bisphosphate 1-phosphatase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR004464
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name yggF Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym ECK2926 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW2897 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym yggK Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved locus tag b2930 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product fructose 1,6-bisphosphatase Experimental - PubMed ID: 19073594
Reference: Escherichia coli K-12 		Apr 2009
Automated Process Approved alternate product name fructose 1,6 bisphosphatase isozyme Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Protein Family
Automated Process Approved protein family IPR004464 Fructose-1,6-bisphosphatase class 2/Sedoheputulose-1,7-bisphosphatase Protein Sequence Similarity - InterPro Domain: IPR004464
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded Protein Sequence Similarity - PFAM Model Name: PF03320
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Approved EC number 3.1.3.11 Protein Sequence Similarity - InterPro Domain: IPR004464
Reference: Escherichia coli K-12 MG1655 		Dec 2008
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG11245 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0009615 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1789298 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:947410 Published Annotation - Entrez Gene Database ID: 947410
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P21437 Published Annotation - Swiss-Prot Accession Number: P21437 Jan 2005
Automated Process Approved db xref UniProtKB/Swiss-Prot:P21437 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC75967.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Unknown Predicted by PSORTb - PSORTb Final_Score: 2.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0006071 glycerol metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004464
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO biological process GO:0006094 gluconeogenesis GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR004464
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO molecular function GO:0042132 fructose 1,6-bisphosphate 1-phosphatase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR004464
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0003965 yggF CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0004486 yggF CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0008996 yggF CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0003648 yggF CDS
Ortholog
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0000816 yggF CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0002627 glpX2 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005906 glpX2 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008211 glpX CDS
Person Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0005561 yggF pseudogene
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0006256 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0005708 glpX2 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008589 CDS
Person Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0079674 yggF pseudogene
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0003364 CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0003876 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0005740 glpX2 CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007240 glpX2 CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0003387 yggF CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0007701 glpX1 CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0004308 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007570 glpX2 CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006088 glpX2 CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008345 glpX2 CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0005752 glpX2 CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0009068 glpX2 CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0006098 glpX2 CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006871 glpX2 CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005852 glpX2 CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006364 glpX2 CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005677 glpX2 CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005258 glpX2 CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006106 glpX2 CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0027947 yggF CDS
Automated Process Approved Go view Escherichia coli HS ADR-0007769 glpX2 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0002742 yggF CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003002 yggF CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0003334 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0003459 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0003209 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0003260 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0003070 glpX2 CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0133849 yggF CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001104 CDS
Person Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0003327 yggF pseudogene
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004794 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0005633 glpX CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0008560 glpX CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006783 glpX CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0007676 glpX CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008296 glpX CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007322 glpX CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0005530 glpX CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0006263 glpX CDS
Person Approved Go view Shigella boydii 227 ADV-0003351 yggF CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0074301 yggF CDS
Person Uncurated Go view Shigella flexneri 301 ABT-0089169 yggF CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0003179 yggF CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003595 glpX_2 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB22770mutantTn5 InsertionRequest the StrainABE-0009615yggFyggF::Tn5(KAN-I-SceI) at position 410 in Plus orientation ,+ pKD46 0Blattner Laboratory
FB23247mutantTn5 InsertionRequest the StrainABE-0009615yggFyggF::Tn5KAN-I-SceI at position 410 in Plus orientation ,- pKD465Tim Durfee (durf@genome.wisc.edu)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3070217 to 3081182
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0009600fbaACDScomplement30701653071244Downstream
ABE-0009605pgkCDScomplement30714593072622Downstream
ABE-0009607epdCDScomplement30726723073691Downstream
ABE-0009610yggCCDScomplement30739763074689Downstream
ABE-0009612fumECDScomplement30746863075195Downstream
ABE-0009615yggFCDScomplement30752173076182Matches
ABE-0174095yggPCDScomplement30761793077456Overlaps Upstream
ABE-0009621cmtACDScomplement30774713078859Upstream
ABE-0009623cmtBCDScomplement30788873079330Upstream
ABE-0009625tktACDScomplement30796443081635Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.