Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0009621 (cmtA) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0009621 showshow history
Names
cmtA JW2900 ECK2928 b2933
Product
PTS system putative mannitol-specific EIIBC component
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 3077471 3078859 1389 463
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR003352 (IPR003352 Phosphotransferase system, EIIC) Apr 2008
Automated Process Approved IPR003501 (IPR003501 Phosphotransferase system, EIIB component, type 2/3) Apr 2008
Automated Process Approved IPR013011 (IPR013011 Phosphotransferase system, EIIB component, type 2) Apr 2008
Automated Process Approved IPR013014 (IPR013014 Phosphotransferase system, EIIC component, type 2) Apr 2008
Automated Process Approved IPR004718 (IPR004718 Phosphotransferase system, mannitol-specific enzyme IIC) Apr 2008
Automated Process Approved IPR036095 (IPR036095 PTS system IIB component-like superfamily) Jul 2018
Automated Process Approved PF02378 (PF02378 Phosphotransferase system, EIIC) Jul 2018
Automated Process Approved PF02302 (PF02302 PTS system, Lactose/Cellobiose specific IIB subunit) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003501
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR004718
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR003352
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Uncurated GO molecular function GO:0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR003352, IPR003501, IPR004718, IPR036095
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0005351 carbohydrate:proton symporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003352
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name cmtA Published Sequence Analysis - PubMed ID: 8353127
Reference: Escherichia coli K-12 		Mar 2008
Person Approved synonym ECK2928 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW2900 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b2933 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product PTS system putative mannitol-specific EIIBC component Published Sequence Analysis - PubMed ID: 8353127
Reference: Escherichia coli K-12 		Mar 2008
Person Uncurated alternate product name PTS family enzyme IICB, mannitol-specific, cryptic Published Annotation - Database Name: GenProtEC Jan 2006
Automated Process Approved alternate product name predicted fused mannitol-specific PTS enzymes: IIB component/IIC component Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved alternate product name PTS system, mannitol-specific enzyme II component, cryptic Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Automated Process Approved protein family PF02378 Phosphotransferase system, EIIC Protein Sequence Similarity - PFAM Model Name: PF02378
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR013014 Phosphotransferase system, EIIC component, type 2 Protein Sequence Similarity - InterPro Domain: IPR013014
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR003352 Phosphotransferase system, EIIC Protein Sequence Similarity - InterPro Domain: IPR003352
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR003501 Phosphotransferase system, EIIB component, type 2/3 Protein Sequence Similarity - InterPro Domain: IPR003501
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR036095 PTS system IIB component-like superfamily Protein Sequence Similarity - InterPro Domain: IPR036095
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR013011 Phosphotransferase system, EIIB component, type 2 Protein Sequence Similarity - InterPro Domain: IPR013011
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR004718 Phosphotransferase system, mannitol-specific enzyme IIC Protein Sequence Similarity - InterPro Domain: IPR004718
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF02302 PTS system, Lactose/Cellobiose specific IIB subunit Protein Sequence Similarity - PFAM Model Name: PF02302
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Approved EC number 2.7.1.69 Published Annotation - Swiss-Prot Accession Number: P69826 Feb 2006
Person Uncurated MultiFun 1.1.1 (metabolism; carbon utilization; carbon compounds) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.4.A.2 (transport; Group Translocators; Phosphotransferase Systems (PEP-dependent PTS); The PTS Fructose-Mannitol (Fru) Family) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.S.115 (transport; substrate; mannitol) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 10 (cryptic genes) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:945256 Published Annotation - Entrez Gene Database ID: 945256
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P69826 Published Annotation - Swiss-Prot Accession Number: P69826 Jan 2006
Automated Process Approved db xref GI:1789301 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P69826 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0009621 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG11792 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Transport of small molecules: Carbohydrates, organic acids, alcohols Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note PTS system, mannitol-specific enzyme II component, cryptic; GO_process: GO:0016052 - carbohydrate catabolic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC75970.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003501
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR003352
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR004718
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Uncurated GO molecular function GO:0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR003352, IPR003501, IPR004718, IPR036095
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0005351 carbohydrate:proton symporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003352
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0003743 cmtA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0004161 cmtA CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0007132 cmtA CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0003320 cmtA CDS
Ortholog
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0000814 mtlA_2 CDS
Automated Process Approved Go view Escherichia albertii TW07627 AFX-0002625 CDS
Automated Process Approved Go view Escherichia coli 101-1 (EAEC) BAB-0005904 CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0002956 CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0002930 cmtA CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0001344 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0006254 CDS
Automated Process Approved Go view Escherichia coli B171 (EPEC) ADN-0005705 CDS
Person Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008233 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0079676 cmtA CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0003367 cmtA CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0003878 cmtA CDS
Automated Process Approved Go view Escherichia coli E110019 (EPEC) ADM-0005738 CDS
Automated Process Approved Go view Escherichia coli E22 (EPEC) ADL-0007243 CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0003389 cmtA CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0007703 cmtA CDS
Automated Process Approved Go view Escherichia coli EC4024 (EHEC) BBI-0004310 CDS
Automated Process Approved Go view Escherichia coli EC4042 (EHEC) BBA-0007572 CDS
Automated Process Approved Go view Escherichia coli EC4045 (EHEC) BBB-0006090 CDS
Automated Process Approved Go view Escherichia coli EC4076 (EHEC) BAZ-0008347 CDS
Automated Process Approved Go view Escherichia coli EC4113 (EHEC) BAY-0005750 CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0009070 CDS
Automated Process Approved Go view Escherichia coli EC4196 (EHEC) BAX-0006096 CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006873 CDS
Automated Process Approved Go view Escherichia coli EC4401 (EHEC) BAV-0005854 CDS
Automated Process Approved Go view Escherichia coli EC4486 (EHEC) BAU-0006366 CDS
Automated Process Approved Go view Escherichia coli EC4501 (EHEC) BAT-0005679 CDS
Automated Process Approved Go view Escherichia coli EC508 (EHEC) BBJ-0005260 CDS
Automated Process Approved Go view Escherichia coli EC869 (EHEC) BBC-0006108 CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0027949 cmtA CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0006920 mtlA_1 CDS
Automated Process Approved Go view Escherichia coli HS ADR-0007771 cmtA pseudogene
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0003413 CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003004 cmtA CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0003456 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0003207 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0003260 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0177517 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0003262 CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0133851 cmtA CDS
Automated Process Approved Go view Escherichia coli TW14588 (EHEC) BBK-0001106 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0003329 cmtA CDS
Automated Process Approved Go view Salmonella Arizonae CDC 346-86 BCD-0004792 CDS
Automated Process Approved Go view Salmonella Javiana GA_MM04042433 BCA-0005635 CDS
Automated Process Approved Go view Salmonella Kentucky CDC 191 BBZ-0008562 CDS
Automated Process Approved Go view Salmonella Kentucky CVM29188 BBP-0006785 CDS
Automated Process Approved Go view Salmonella Newport SL254 BBQ-0007678 CDS
Automated Process Approved Go view Salmonella Saintpaul SARA29 BBM-0008294 CDS
Automated Process Approved Go view Salmonella Schwarzengrund CVM19633 BBO-0007324 CDS
Automated Process Approved Go view Salmonella Schwarzengrund SL480 BBY-0005532 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0006261 CDS
Person Approved Go view Shigella boydii 227 ADV-0003349 cmtA CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0008779 cmtA CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0003585 cmtA CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003593 mtlA_2 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3072471 to 3083859
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0009605pgkCDScomplement30714593072622Downstream
ABE-0009607epdCDScomplement30726723073691Downstream
ABE-0009610yggCCDScomplement30739763074689Downstream
ABE-0009612fumECDScomplement30746863075195Downstream
ABE-0009615yggFCDScomplement30752173076182Downstream
ABE-0174095yggPCDScomplement30761793077456Downstream
ABE-0009621cmtACDScomplement30774713078859Matches
ABE-0009623cmtBCDScomplement30788873079330Upstream
ABE-0009625tktACDScomplement30796443081635Upstream
ABE-0009629loiPCDSforward30819133082671Upstream
ABE-0285560repeat_regionforward30826903082836Upstream
ABE-0009632speBCDScomplement30828773083797Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.