Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0009623 (cmtB) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0009623 showshow history
Names
cmtB JW2901 ECK2929 tolM b2934
Product
PTS system putative mannitol-specific EIIA component
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 3078887 3079330 444 148
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR002178 (IPR002178 PTS EIIA type-2 domain) Apr 2008
Automated Process Approved IPR016152 (IPR016152 Phosphotransferase/anion transporter) Jul 2018
Automated Process Approved PF00359 (PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002178
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002178
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0005351 carbohydrate:proton symporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002178
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name cmtB Published Sequence Analysis - PubMed ID: 8353127
Reference: Escherichia coli K-12 		Mar 2008
Person Approved synonym tolM Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved synonym JW2901 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK2929 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b2934 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product PTS system putative mannitol-specific EIIA component Published Sequence Analysis - PubMed ID: 8353127
Reference: Escherichia coli K-12 		Mar 2008
Person Approved alternate product name PTS system, mannitol-specific enzyme II component, cryptic Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Uncurated alternate product name PTS family enzyme IIA, mannitol-specific, cryptic Published Annotation - Database Name: GenProtEC Jan 2006
Protein Family
Automated Process Approved protein family PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 Protein Sequence Similarity - PFAM Model Name: PF00359
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR002178 PTS EIIA type-2 domain Protein Sequence Similarity - InterPro Domain: IPR002178
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR016152 Phosphotransferase/anion transporter Protein Sequence Similarity - InterPro Domain: IPR016152
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Approved EC number 2.7.1.- Published Annotation - Swiss-Prot Accession Number: P69824 Feb 2006
Person Uncurated MultiFun 4.4.A.2 (transport; Group Translocators; Phosphotransferase Systems (PEP-dependent PTS); The PTS Fructose-Mannitol (Fru) Family) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 10 (cryptic genes) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.S.115 (transport; substrate; mannitol) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.1.1 (metabolism; carbon utilization; carbon compounds) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG11791 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:945125 Published Annotation - Entrez Gene Database ID: 945125
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref GI:1789302 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P69824 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0009623 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P69824 Published Annotation - Swiss-Prot Accession Number: P69824 Jan 2006
Person Approved function transport; Transport of small molecules: Carbohydrates, organic acids, alcohols Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note PTS system, mannitol-specific enzyme II component, cryptic; GO_process: GO:0016052 - carbohydrate catabolic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC75971.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Unknown Predicted by PSORTb - PSORTb Final_Score: 2.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002178
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002178
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005351 carbohydrate:proton symporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002178
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0003579 cmtB CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0004016 cmtB CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0007994 cmtB CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0003329 cmtB CDS
Ortholog
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0000813 cmtB CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0002624 cmtB CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005903 cmtB CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0002957 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008208 cmtB CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0002931 cmtB CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0001343 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0006253 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0005704 cmtB CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0079677 cmtB CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0003368 cmtB CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0003879 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0005737 cmtB CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007244 cmtB CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0003390 cmtB CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0007704 cmtB CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0004311 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007573 cmtB CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006091 cmtB CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008348 cmtB CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0005749 cmtB CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0009071 cmtB CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0006095 cmtB CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006874 cmtB CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005855 cmtB CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006367 cmtB CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005680 cmtB CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005261 cmtB CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006109 cmtB CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0027950 cmtB CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0006919 cmtB CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0003414 cmtB CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003005 cmtB CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0003455 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0003206 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0003261 cmtB CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0177518 cmtB CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0003263 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0003073 cmtB CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0133852 cmtB CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001107 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0003330 cmtB CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000995 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004791 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0005636 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0008563 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006786 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0007679 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008293 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007325 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0005533 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0006260 CDS
Person Approved Go view Shigella boydii 227 ADV-0003348 cmtB CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0008780 cmtB CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003895 cmtB CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0003584 cmtB CDS
Person Approved Go view Shigella sonnei 046 ADD-0003373 cmtB CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0003983 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003592 cmtB CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003212 ulaC_2 CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003122 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3073887 to 3084330
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0009610yggCCDScomplement30739763074689Downstream
ABE-0009612fumECDScomplement30746863075195Downstream
ABE-0009615yggFCDScomplement30752173076182Downstream
ABE-0174095yggPCDScomplement30761793077456Downstream
ABE-0009621cmtACDScomplement30774713078859Downstream
ABE-0009623cmtBCDScomplement30788873079330Matches
ABE-0009625tktACDScomplement30796443081635Upstream
ABE-0009629loiPCDSforward30819133082671Upstream
ABE-0285560repeat_regionforward30826903082836Upstream
ABE-0009632speBCDScomplement30828773083797Upstream
ABE-0009634speACDScomplement30839353085911Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.