Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0009650 (metK) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0009650 showshow history
Names
metK metX JW2909 ECK2937 b2942
Product
methionine adenosyltransferase 1
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 3086706 3087860 1155 385
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0001078
EnteroFam0009650: Trusted threshold=1167.5; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR002133 (IPR002133 S-adenosylmethionine synthetase) Apr 2008
Automated Process Approved IPR022628 (IPR022628 S-adenosylmethionine synthetase, N-terminal) Jul 2018
Automated Process Approved IPR022630 (IPR022630 S-adenosylmethionine synthetase, C-terminal) Jul 2018
Automated Process Approved IPR022629 (IPR022629 S-adenosylmethionine synthetase, central domain) Jul 2018
Automated Process Approved IPR022636 (IPR022636 S-adenosylmethionine synthetase superfamily) Jul 2018
Automated Process Approved PF00438 (PF00438 S-adenosylmethionine synthetase, N-terminal domain) Jul 2018
Automated Process Approved PF02773 (PF02773 S-adenosylmethionine synthetase, C-terminal domain) Jul 2018
Automated Process Approved PF02772 (PF02772 S-adenosylmethionine synthetase, central domain) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Approved GO biological process GO:0006556 S-adenosylmethionine biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006730 one-carbon metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002133
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002133
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004478 methionine adenosyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002133
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name metK Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym ECK2937 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym metX Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved synonym JW2909 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b2942 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product methionine adenosyltransferase 1 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved alternate product name S-adenosylmethionine synthetase Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved alternate product name methionine adenosyltransferase 1 (AdoMet synthetase); methyl and propylamine donor, corepressor of met genes Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Uncurated alternate product name methionine adenosyltransferase 1 (AdoMet synthetase) Published Annotation - Database Name: GenProtEC Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0009650: Trusted threshold=1167.5; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0001078
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family PF02772 S-adenosylmethionine synthetase, central domain Protein Sequence Similarity - PFAM Model Name: PF02772
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR022630 S-adenosylmethionine synthetase, C-terminal Protein Sequence Similarity - InterPro Domain: IPR022630
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR022628 S-adenosylmethionine synthetase, N-terminal Protein Sequence Similarity - InterPro Domain: IPR022628
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF00438 S-adenosylmethionine synthetase, N-terminal domain Protein Sequence Similarity - PFAM Model Name: PF00438
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR022636 S-adenosylmethionine synthetase superfamily Protein Sequence Similarity - InterPro Domain: IPR022636
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR002133 S-adenosylmethionine synthetase Protein Sequence Similarity - InterPro Domain: IPR002133
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF02773 S-adenosylmethionine synthetase, C-terminal domain Protein Sequence Similarity - PFAM Model Name: PF02773
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR022629 S-adenosylmethionine synthetase, central domain Protein Sequence Similarity - InterPro Domain: IPR022629
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Approved EC number 2.5.1.6 Published Annotation - Swiss-Prot Accession Number: P0A817 Feb 2006
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.7.20 (metabolism; central intermediary metabolism; S-adenosyl methionine biosynthesis) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 3.1.4 (regulation; type of regulation; regulation level unknown) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1789311 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:945389 Published Annotation - Entrez Gene Database ID: 945389
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P0A817 Published Annotation - Swiss-Prot Accession Number: P0A817 Jan 2006
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0A817 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0009650 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10589 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Central intermediary metabolism: Pool, multipurpose conversions Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Uncurated molecular interaction Interacts with the product of dnaJ ASAP:54:(interacting residues not known); by MALDI-TOF and LC-MS Experimental - PubMed ID: 15690043
Reference: Escherichia coli K-12 W3110 		Mar 2005
Person Uncurated molecular interaction Interacts with the product of secA ASAP:343:(interacting residues not known); by MALDI-TOF Experimental - PubMed ID: 15690043
Reference: Escherichia coli K-12 W3110 		Mar 2005
Person Uncurated molecular interaction Interacts with the product of dnaK ASAP:52:(interacting residues not known); by MALDI-TOF Experimental - PubMed ID: 15690043
Reference: Escherichia coli K-12 W3110 		Mar 2005
Automated Process Approved note methionine adenosyltransferase 1 (AdoMet synthetase); methyl and propylamine donor, corepressor of met genes; GO_component: GO:0005737 - cytoplasm; GO_process: GO:0006556 - S-adenosylmethionine biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC75979.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 9.97
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0006730 one-carbon metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002133
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO biological process GO:0006556 S-adenosylmethionine biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002133
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004478 methionine adenosyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002133
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0001078 metK CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001640 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000313 metK CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000225 metK CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000531 metK CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000350 metK CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0003001 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0003656 CDS
Person Uncurated Go view Buchnera aphidicola APS ABZ-0129678 metK CDS
Person Uncurated Go view Buchnera aphidicola Sg [T] ABV-0104519 metK CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0000295 metK CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0000808 metK CDS
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0004536 metK CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0004978 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0015193 metK CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0003724 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0004740 metK CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0305077 metK CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0000724 metK CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002926 metK CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0002606 metK CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005893 metK CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0002965 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008200 metK CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0002938 metK CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0001334 metK CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0006247 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0005688 metK CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008253 metK pseudogene
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0079689 metK CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0003376 metK CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0003897 metK CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0005728 metK CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007261 metK CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0003400 metK CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0007720 metK CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0004322 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007582 metK CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006100 metK CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008357 metK CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0005740 metK CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0009080 metK CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0006086 metK CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006883 metK CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005864 metK CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006376 metK CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005688 metK CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005271 metK CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006117 metK CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0027960 metK CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0006910 metK CDS
Automated Process Approved Go view Escherichia coli HS ADR-0007780 metK CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0003424 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0002750 metK CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003013 metK CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0003315 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0003446 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0003195 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0003272 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0003271 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0003082 metK CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0133861 metK CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001118 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0003340 metK CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0003089 metK CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0001407 metK CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0003384 metK CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0001579 metK CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0004991 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0002462 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0002730 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0002491 metK CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0001512 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0003305 metK CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0000897 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0010951 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0000109 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0291194 metK CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0006312 metK CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0064236 metK CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002319 metK CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0002190 metK CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0003814 metK CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0008925 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0145226 metK CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0000385 metK CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0007419 metK CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004781 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0003549 metK CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007685 metK CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0009568 metK CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0009054 metK CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008787 metK CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0007687 metK CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006648 metK CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0005645 metK CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0008600 metK CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006803 metK CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0007694 metK CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005376 metK CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0002981 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0002952 metK CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0003868 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007849 metK CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008278 metK CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007334 metK CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0005542 metK CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0111937 metK CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0084721 metK CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0003739 metK CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0099624 metK CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006166 metK CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0006252 metK CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0004789 metK CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0001735 metK CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0264484 metK CDS
Person Approved Go view Shigella boydii 227 ADV-0003341 metK CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0008788 metK CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003887 metK CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0003569 metK CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0074320 metK CDS
Person Approved Go view Shigella flexneri 301 ABT-0089182 metK CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0003195 metK CDS
Person Approved Go view Shigella sonnei 046 ADD-0003381 metK CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0000520 VC0472 CDS
Person Uncurated Go view Wigglesworthia morsitans AEQ-0000486 metK CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0001781 metK CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0003089 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0009906 metK CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001695 metK CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003951 metK CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002242 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0242804 metK CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007469 metK CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000416 metK CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0006716 metK CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002420 metK CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0118356 metK CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006714 metK CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0004912 metK CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006579 metK CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007996 metK CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0033083 metK CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007873 metK CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0003764 metK CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0000691 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006253 metK CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004785 metK CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0003311 metK CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0003982 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0000989 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0007371 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0002441 metK CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3081706 to 3092860
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0009629loiPCDSforward30819133082671Upstream
ABE-0285560repeat_regionforward30826903082836Upstream
ABE-0009632speBCDScomplement30828773083797Upstream
ABE-0009634speACDScomplement30839353085911Upstream
ABE-0009638yqgBCDScomplement30859203086051Upstream
ABE-0285745yqgGCDScomplement30861453086288Upstream
ABE-0009643yqgCCDSforward30861873086402Upstream
ABE-0009650metKCDSforward30867063087860Matches
ABE-0285561repeat_regionforward30879123087937Downstream
ABE-0009654galPCDSforward30882843089678Downstream
ABE-0009657yggICDSforward30897553090252Downstream
ABE-0009661endACDSforward30903473091054Downstream
ABE-0009665rsmECDSforward30911343091865Downstream
ABE-0009667gshBCDSforward30918783092828Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.