Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0009692 (rdgB) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0009692 showshow history
Names
rdgB yggV JW2921 ECK2949 b2954
Product
dITP/XTP pyrophosphatase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 3096681 3097274 594 198
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0001089
EnteroFam0009692: Trusted threshold=533.5; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR002637 (IPR002637 Ham1-like protein) Apr 2008
Automated Process Approved IPR029001 (IPR029001 Inosine triphosphate pyrophosphatase-like) Jul 2018
Automated Process Approved PF01725 (PF01725 Ham1 family) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Uncurated GO biological process GO:0009143 nucleoside triphosphate catabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR002637
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO molecular function GO:0047429 nucleoside-triphosphate diphosphatase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR002637
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0016787 hydrolase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002637
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Uncurated name rdgB Published Annotation - PubMed ID: 2442140
Reference: Escherichia coli K-12 		Apr 2009
Person Approved synonym JW2921 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym yggV Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym ECK2949 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b2954 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product dITP/XTP pyrophosphatase Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name putative ribosomal protein Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0009692: Trusted threshold=533.5; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0001089
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR029001 Inosine triphosphate pyrophosphatase-like Protein Sequence Similarity - InterPro Domain: IPR029001
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR002637 Ham1-like protein Protein Sequence Similarity - InterPro Domain: IPR002637
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF01725 Ham1 family Protein Sequence Similarity - PFAM Model Name: PF01725
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Automated Process Uncurated EC number 3.6.1.19 Published Annotation - Database Name: EC2GO: GO:0047429
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated EC number 3.6.1.15 Protein Sequence Similarity - InterPro Domain: IPR002637
Reference: Escherichia coli K-12 MG1655 		Dec 2008
Automated Process Approved EC number 3.6.1.- Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG12982 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1789324 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:947429 Published Annotation - Entrez Gene Database ID: 947429
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P52061 Published Annotation - Swiss-Prot Accession Number: P52061 Jan 2005
Automated Process Approved db xref ASAP:ABE-0009692 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P52061 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function putative structure; Not classified Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note putative ribosomal protein Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC75991.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Unknown Predicted by PSORTb - PSORTb Final_Score: 2.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Approved subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Uncurated GO biological process GO:0009143 nucleoside triphosphate catabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR002637
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0016787 hydrolase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002637
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0047429 nucleoside-triphosphate diphosphatase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR002637
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0001089 rdgB CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001744 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000616 rdgB CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000761 rdgB CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001510 rdgB CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000565 rdgB CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0003221 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0003861 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0003645 rdgB CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0000281 rdgB CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0000796 rdgB CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0004548 rdgB CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0005272 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0018492 rdgB CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0003482 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0004728 rdgB CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0305135 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0000709 yggV CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002941 CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0002593 rdgB CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005881 rdgB CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0002978 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008187 rdgB CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0002950 yggV CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0001322 rdgB CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0006233 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0005676 rdgB CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008266 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0079701 yggV CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0003388 rdgB CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0003909 rdgB CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0005716 rdgB CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007273 rdgB CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0003412 rdgB CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0007734 rdgB CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000214 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007595 rdgB CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006113 rdgB CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008370 rdgB CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0005727 rdgB CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0009093 rdgB CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0006073 rdgB CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006896 rdgB CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005877 rdgB CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006389 rdgB CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005701 rdgB CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005284 rdgB CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006129 rdgB CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0027972 yggV CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0006897 rdgB CDS
Automated Process Approved Go view Escherichia coli HS ADR-0007795 rdgB CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0003436 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0002760 yggV CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003025 yggV CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0003303 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0003434 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0003183 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0003284 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0177539 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0003283 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0003094 rdgB CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0133873 yggV CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001130 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0003352 yggV CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0003101 rdgB CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0001196 rdgB CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0003397 yggV CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0001592 rdgB CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0005251 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0002476 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0002744 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0002504 yggV CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0001499 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0003317 yggV CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0000885 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0010962 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0000123 CDS
Automated Process Approved Go view Pantoea stewartii DC283 ACV-0291206 CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0006326 yggV CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0063945 yggV CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002102 CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0002116 CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000848 yggV CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0008633 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0139420 CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0005129 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0007433 rdgB CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004766 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0003563 yggV CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007698 rdgB CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0009613 yggV CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0009098 yggV CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008773 rdgB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0007701 rdgB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006662 rdgB CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0005659 rdgB CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0008586 rdgB CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006817 rdgB CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0007708 rdgB CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005362 rdgB CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0002994 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0002965 yggV CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0003883 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007863 rdgB CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0007207 rdgB CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007348 rdgB CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0005557 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0111963 yggV CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0084734 yggV CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0003753 yggV CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0099663 yggV CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006152 rdgB CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0006238 rdgB CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0004775 rdgB CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0001683 rdgB CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0266982 CDS
Person Approved Go view Shigella boydii 227 ADV-0003329 yggV CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0008800 rdgB CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003874 rdgB CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0003557 yggV CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0074333 yggV CDS
Person Approved Go view Shigella flexneri 301 ABT-0089194 yggV CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0003207 yggV CDS
Person Approved Go view Shigella sonnei 046 ADD-0003393 yggV CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0000504 VC0456 CDS
Person Uncurated Go view Wigglesworthia morsitans AEQ-0000184 yggV CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0005560 CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0003390 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0009952 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001677 rdgB CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003689 yggV CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002259 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0242779 yggV CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004246 rdgB CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000400 yggV CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0006701 rdgB CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002406 CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0118390 yggV CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006729 rdgB CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0004897 rdgB CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001149 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006594 rdgB CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0008011 rdgB CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0033100 yggV CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007858 rdgB CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0003780 yggV CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0000675 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006268 rdgB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004770 rdgB CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0003325 yggV CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0003999 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0000972 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0007316 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0002457 rdgB CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3091681 to 3102274
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0009665rsmECDSforward30911343091865Upstream
ABE-0009667gshBCDSforward30918783092828Upstream
ABE-0009669yqgECDSforward30929373093500Upstream
ABE-0009672yqgFCDSforward30935003093916Upstream
ABE-0285562repeat_regionforward30939663094090Upstream
ABE-0009675yggRCDScomplement30941003095080Upstream
ABE-0009681yggSCDSforward30950983095802Upstream
ABE-0009685yggTCDSforward30958203096386Upstream
ABE-0009690yggUCDSforward30963833096673Upstream
ABE-0009692rdgBCDSforward30966813097274Matches
ABE-0009694hemWCDSforward30972673098403Overlaps Downstream
ABE-0285563repeat_regionforward30984133098533Downstream
ABE-0009697yggMCDScomplement30985583099565Downstream
ABE-0009700ansBCDScomplement30996823100728Downstream
ABE-0009706yggNCDScomplement31009043101623Downstream
ABE-0285564repeat_regionforward31016963101774Downstream
ABE-0009712yggLCDScomplement31018073102133Downstream
ABE-0009714trmBCDScomplement31021333102852Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.